List of publications using CHIR99021 (Axon 1386) purchased from Axon Medchem
https://www.cell.com/developmental-cell/pdf/S1534-5807(23)00552-X.pdf
*2i: CHIR99021 and PD0325901 from Axon Medchem
Ensinck, I., Sideri, T., Modic, M., Capitanchik, C., Vivori, C., Toolan-Kerr, P., & van Werven, F. J. (2023). m6A-ELISA, a simple method for quantifying N6-methyladenosine from mRNA populations. RNA, 29(5), 705-712.
https://rnajournal.cshlp.org/content/29/5/705.short
Cai, D., Wang, X., Sun, Y., Fan, H., Zhou, J., Yang, Z., ... & Liang, P. (2023). Patient-specific iPSC-derived cardiomyocytes reveal aberrant activation of Wnt/β-catenin signaling in SCN5A-related Brugada syndrome. Stem Cell Research & Therapy, 14(1), 241.
https://link.springer.com/article/10.1186/s13287-023-03477-3
Windt, L. M., Wiendels, M., Dostanić, M., Bellin, M., Sarro, P. M., Mastrangeli, M., ... & van Meer, B. J. (2023). Miniaturized engineered heart tissues from hiPSC-derived triple cell type co-cultures to study human cardiac function. Biochemical and Biophysical Research Communications, 681, 200-211.
https://www.sciencedirect.com/science/article/pii/S0006291X23010707
Tong, K., Bandari, M., Carrick, J. N., Zenkevich, A., Kothari, O. A., Shamshad, E., ... & Verzi, M. P. (2023). In Vitro Organoid-Based Assays Reveal SMAD4 Tumor-Suppressive Mechanisms for Serrated Colorectal Cancer Invasion. Cancers, 15(24), 5820.
https://www.mdpi.com/2072-6694/15/24/5820
Aoi, T., Tanaka, A., Furuhashi, K., Ikeya, M., Shimizu, A., Arioka, Y., ... & Maruyama, S. (2023). < Editors’ Choice> Mesenchymal stem/stromal cells generated from induced pluripotent stem cells are highly resistant to senescence. Nagoya Journal of Medical Science, 85(4), 682.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10751492/
Barnhoorn, S., Milanese, C., Li, T., Dons, L., Ghazvini, M., Farina, S., ... & Mastroberardino, P. G. (2023). Orthogonal analysis of mitochondrial function in Parkinson's disease patients. bioRxiv, 2023-07.
https://www.biorxiv.org/content/10.1101/2023.07.11.548533v1.full
Hoetker, M. S., Yagi, M., Di Stefano, B., Langerman, J., Cristea, S., Wong, L. P., ... & Hochedlinger, K. (2023). H3K36 methylation maintains cell identity by regulating opposing lineage programmes. Nature cell biology, 25(8), 1121-1134.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10896483/
Hornung, B. V., Azmani, Z., den Dekker, A. T., Oole, E., Ozgur, Z., Brouwer, R. W., ... & van IJcken, W. F. (2023). Comparison of Single Cell Transcriptome Sequencing Methods: Of Mice and Men. Genes, 14(12), 2226.
https://www.mdpi.com/2073-4425/14/12/2226
Naito, Y., Sakamoto, S., Kojima, T., Homma, M., Tanaka, M., & Matsui, H. (2023). Novel beta-glucocerebrosidase chaperone compounds identified from cell-based screening reduce pathologically accumulated glucosylsphingosine in iPS-derived neuronal cells. SLAS Discovery, 28(7), 344-349.
https://www.sciencedirect.com/science/article/pii/S2472555223000485
* CHIR99021 and LDN193189 from Axon Medchem
Arboit, M., Zorzan, I., Pellegrini, M., Martini, P., Carbognin, E., & Martello, G. (2023). KLF7 is a general inducer of human pluripotency. bioRxiv, 2023-09.
https://www.biorxiv.org/content/10.1101/2023.09.06.556189v1.full
*7i: PD0325901, Y27632, XAV939, GO6983, CHIR99021, A83-01, SB432541 from Axon Medchem
Sun, Y., Su, J., Wang, X., Wang, J., Guo, F., Qiu, H., ... & Jiang, C. (2023). Patient-specific iPSC-derived cardiomyocytes reveal variable phenotypic severity of Brugada syndrome. EBioMedicine, 95.
https://www.thelancet.com/journals/ebiom/article/PIIS2352-3964(23)00306-7/fulltext
Chien, Y., Huang, X. Y., Chien, C. S., Yarmishyn, A., Liu, Y. H., Hsiao, Y. J., ... & Chiou, G. Y. (2023). Paracrinal Regulation of Neutrophil Functions by Coronaviral Infection in Ipsc-Derived Alveolar Type Ii Epithelial Cells. Available at SSRN 4537785.
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4537785
Oldak, B., Wildschutz, E., Bondarenko, V., Comar, M. Y., Zhao, C., Aguilera-Castrejon, A., ... & Hanna, J. H. (2023). Complete human day 14 post-implantation embryo models from naive ES cells. Nature, 622(7983), 562-573.
https://www.nature.com/articles/s41586-023-06604-5.
*7i from Axon Medchem, incl GO6983, PD0325901, CGP77675, Y27632, BIR796, A83-01, CHIR99021.
Ugur, E. (2023). Porte,. de la. Qin, WH, Bultmann, S., I ano a,., Drukker, ME,… Leonhardt, H.
https://scholarlypublications.universiteitleiden.nl/access/item%3A3590032/download
*2i : PD0325901 and CHIR99021 from Axon Medchem.
Supakul, S., Hatakeyama, Y., Leventoux, N., Itsuno, M., Numata, N., Hiramine, H., ... & Okano, H. (2023). Urine-derived cells from the aged donor for the 2D/3D modeling of neural cells via iPSCs. Aging Brain, 4, 100101.
https://www.sciencedirect.com/science/article/pii/S2589958923000385
Farkas, K., & Ferretti, E. (2023). Derivation of Human Extraembryonic Mesoderm-like Cells from Primitive Endoderm. International Journal of Molecular Sciences, 24(14), 11366.
https://www.mdpi.com/1422-0067/24/14/11366
*CHIR99021, PIK90 and C59 from Axon Medchem
Carido, M., Völkner, M., Steinheuer, L. M., Wagner, F., Kurth, T., Dumler, N., ... & Karl, M. O. (2023). Reliability of human retina organoid generation from hiPSC-derived neuroepithelial cysts. Frontiers in Cellular Neuroscience, 17.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10587494/
Klug, K., Spitzel, M., Hans, C., Klein, A., Schottmann, N. M., Erbacher, C., & Üçeyler, N. (2023). Endothelial Cell Dysfunction and Hypoxia as Potential Mediators of Pain in Fabry Disease: A Human-Murine Translational Approach. International Journal of Molecular Sciences, 24(20), 15422.
https://www.mdpi.com/1422-0067/24/20/15422
Costamagna, D., Bastianini, V., Corvelyn, M., Duelen, R., Deschrevel, J., De Beukelaer, N., ... & Desloovere, K. (2023). Botulinum Toxin Treatment of Adult Muscle Stem Cells from Children with Cerebral Palsy and HiPSC-Derived Neuromuscular Junctions. Cells, 12(16), 2072.
https://www.mdpi.com/2073-4409/12/16/2072
Guidotti, G., Duelen, R., Bloise, N., Soccio, M., Gazzano, M., Aluigi, A., ... & Lotti, N. (2023). The ad hoc chemical design of random PBS-based copolymers influences the activation of cardiac differentiation while altering the HYPPO pathway target genes in hiPSCs. Biomaterials Advances, 154, 213583.
https://www.sciencedirect.com/science/article/pii/S2772950823003060
Yadav, S., Fujimoto, K., Takenaga, T., Takahashi, S., Muramoto, Y., Mikawa, R., ... & Yokokawa, R. (2023). Isogenic iPSC-derived proximal and distal lung-on-chip models: Tissue-and virus-specific immune responses in human lungs. bioRxiv, 2023-11.
https://www.biorxiv.org/content/10.1101/2023.11.24.568532v2.full
Ferlazzo, G. M., Gambetta, A. M., Amato, S., Cannizzaro, N., Angiolillo, S., Arboit, M., ... & Martello, G. (2023). Genome-wide screening in pluripotent cells identifies Mtf1 as a suppressor of mutant huntingtin toxicity. Nature Communications, 14(1), 3962.
https://www.nature.com/articles/s41467-023-39552-9
*4i from Axon MedChem, including CHIR99021, PD0325901, SB431542, Y27632
Correia, B., Sousa, M. I., & Ramalho-Santos, J. (2023). Metabolic Effects on Mouse Embryonic Stem Cells and the Canonical Mammalian Target of Rapamycin Pathway. BioChem, 3(4), 170-181.
https://www.mdpi.com/2673-6411/3/4/12
*2i: PD0325901 and CHIR99021 from Axon MedChem
Doni, D., Cavion, F., Bortolus, M., Baschiera, E., Muccioli, S., Tombesi, G., ... & Costantini, P. (2023). Human frataxin, the Friedreich ataxia deficient protein, interacts with mitochondrial respiratory chain. Cell Death & Disease, 14(12), 805.
https://www.nature.com/articles/s41419-023-06320-y
Carbognin, E., Carlini, V., Panariello, F., Chieregato, M., Guerzoni, E., Benvegnù, D., ... & Martello, G. (2023). Esrrb guides naive pluripotent cells through the formative transcriptional programme. Nature cell biology, 25(5), 643-657.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7614557/
*4i from Axon MedChem, including PD0325901, CHIR99021, XAV939 and Y27632.
van der Wal, E., Iuliano, A., LM, S., Bholasing, A. P., Priesmann, D., Sharma, P., ... & de Greef, J. C. (2023). Highly contractile 3D tissue engineered skeletal muscles from human iPSCs reveal similarities with primary myoblast-derived tissues. Stem Cell Reports, 18(10), 1954-1971.
https://www.cell.com/stem-cell-reports/pdf/S2213-6711(23)00313-2.pdf
Papadopoulou, M. A., Rogdakis, T., Charou, D., Peteinareli, M., Ntarntani, K., Gravanis, A., ... & Charalampopoulos, I. (2023). Neurotrophin analog ENT-A044 activates the p75 neurotrophin receptor, regulating neuronal survival in a cell context-dependent manner. International Journal of Molecular Sciences, 24(14), 11683.
https://www.mdpi.com/1422-0067/24/14/11683
Warin, J., Vedrenne, N., Tam, V., Zhu, M., Yin, D., Lin, X., ... & Camus, A. Integration of in Vitro and in Vivo Models Defines a Molecular Signature Reference for Human Embryonic Notochordal Cells.
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4540852
*CHIR99021 and SB431542 from Axon Medchem
Tamura, T., Yamasoba, D., Oda, Y., Ito, J., Kamasaki, T., Nao, N., ... & Fukuhara, T. (2023). Comparative pathogenicity of SARS-CoV-2 Omicron subvariants including BA. 1, BA. 2, and BA. 5. Communications Biology, 6(1), 1-12.
https://www.nature.com/articles/s42003-023-05081-w[
Trapannone, R., Romanov, J., & Martens, S. (2023). p62 and NBR1 functions are dispensable for aggrephagy in mouse ESCs and ESC-derived neurons. Life Science Alliance, 6(11).
https://www.life-science-alliance.org/content/6/11/e202301936.full
*2i from Axon Medchem
Gökbuget, D., Lenshoek, K., Boileau, R. M., Bayerl, J., Huang, H., Wiita, A. P., ... & Blelloch, R. (2023). Transcriptional repression upon S phase entry protects genome integrity in pluripotent cells. Nature Structural & Molecular Biology, 30(10), 1561-1570.
https://www.nature.com/articles/s41594-023-01092-7
Mendes-Pinheiro, B., Campos, J., Marote, A., Soares-Cunha, C., Nickels, S. L., Monzel, A. S., ... & Salgado, A. J. (2023). Treating Parkinson’s Disease with Human Bone Marrow Mesenchymal Stem Cell Secretome: A Translational Investigation Using Human Brain Organoids and Different Routes of In Vivo Administration. Cells, 12(21), 2565.
https://www.mdpi.com/2073-4409/12/21/2565
Krüger, J. (2023). Modelling gastrointestinal development and disease with stem cell-derived organoids (Doctoral dissertation, Universität Ulm).
https://oparu.uni-ulm.de/xmlui/handle/123456789/50726
Iuliano, A., Haalstra, M., Raghuraman, R., Bielawski, K., Bholasing, A. P., van der Wal, E., ... & Pijnappel, W. P. (2023). Real‐time and Multichannel Measurement of Contractility of hiPSC‐Derived 3D Skeletal Muscle using Fiber Optics‐Based Sensing. Advanced Materials Technologies, 8(22), 2300845.
https://onlinelibrary.wiley.com/doi/full/10.1002/admt.202300845
Meek, S., Singh-Dolt, K., Sutherland, L., Sharp, M. G., Del-Pozo, J., Walker, D., & Burdon, T. (2023). p75NTR neurotrophin receptor function is redundant for development, growth and fertility in the rat. bioRxiv, 2023-12.
https://www.biorxiv.org/content/10.1101/2023.12.27.573424.abstract
*2i: CHIR99021 and PD0325901 from Axon Medchem
Klein, T., Gruener, J., Breyer, M., Schlegel, J., Schottmann, N. M., Hofmann, L., ... & Uceyler, N. (2023). Small fibre neuropathy in Fabry disease: A human-derived neuronal in vitro disease model. bioRxiv, 2023-08.
https://www.biorxiv.org/content/10.1101/2023.08.09.552621v1.full
Meier, A. B., Zawada, D., De Angelis, M. T., Martens, L. D., Santamaria, G., Zengerle, S., ... & Moretti, A. (2023). Epicardioid single-cell genomics uncovers principles of human epicardium biology in heart development and disease. Nature Biotechnology, 41(12), 1787-1800.
https://www.nature.com/articles/s41587-023-01718-7
Aizawa, E., Ozonov, E. A., Kawamura, Y. K., Dumeau, C. E., Nagaoka, S., Kitajima, T. S., ... & Wutz, A. (2023). Epigenetic regulation limits competence of pluripotent stem cell‐derived oocytes. The EMBO Journal, 42(23), e113955.
https://www.embopress.org/doi/full/10.15252/embj.2023113955
*2i: CHIR99021 and PD0325901 from Axon Medchem
Fujimori, T., Rios-Martinez, C., Thurm, A. R., Hinks, M. M., Doughty, B. R., Sinha, J., ... & Bintu, L. (2023). Single-cell chromatin state transitions during epigenetic memory formation. bioRxiv.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10592931/
*2i: CHIR99021 and PD0325901 from Axon Medchem
Mulas, C., Stammers, M., Salomaa, S. I., Heinzen, C., Suter, D. M., Smith, A., & Chalut, K. J. (2023). ERK signalling orchestrates metachronous transition from naive to formative pluripotency. bioRxiv, 2023-07.
https://www.biorxiv.org/content/10.1101/2023.07.20.549835v1.full
*CHIR99021, PD0325901, BI_D1870 from Axon Medchem
Spreng, A. S. (2023). Generation and functional characterization of specific astrocyte subpopulations.
https://kops.uni-konstanz.de/entities/publication/12704d06-e1c4-42ad-ba6e-a3dc4e84618e
EPS, E. P. S. (2023). Real-time and Multichannel Measurement of Contractility of hiPSC-Derived 3D Skeletal Muscle using Fiber Optics-Based Sensing.
https://pure.eur.nl/ws/files/102509909/Real-time_and_Multichannel_Measurement_of_Contractility_of_hiPSC-Derived_3D_Skeletal_Muscle_using_Fiber_Optics-Based_Sensing.pdf
Vitale, M. R. (2023). Excitatory/inhibitory balance in iPSC-derived glutamatergic/GABAergic neuronal networks: differential Cadherin-13 genotype effects (Doctoral dissertation, Universität Würzburg).
https://opus.bibliothek.uni-wuerzburg.de/opus4-wuerzburg/frontdoor/deliver/index/docId/28789/file/Vitale_Maria_Rosaria_Thesis.pdf
Rosowski, S., Remmert, C., Marder, M., Akishiba, M., Bushe, J., Feuchtinger, A., ... & Meier, M. (2023). Single-cell characterization of neovascularization using hiPSC-derived endothelial cells in a 3D microenvironment. Stem Cell Reports, 18(10), 1972-1986.
https://www.cell.com/stem-cell-reports/pdf/S2213-6711(23)00307-7.pdf
Nakashima, Y., Iguchi, H., Shimizu, E., Le, M. N., Takakura, K., Nakamura, Y., ... & Tsukahara, M. (2023). Improved production of induced pluripotent stem cells using dot pattern culture plates. Tissue Engineering Part C: Methods, 29(9), 410-423.
https://www.liebertpub.com/doi/full/10.1089/ten.tec.2023.0068
Krishna, A., Meynert, A., Kelder, M., Ewing, A., Sheraz, S., Ferrer-Vacquer, A., ... & Ozdemir, D. D. (2023). Mutational scanning reveals oncogenic CTNNB1 mutations have diverse effects on signalling and clinical traits. bioRxiv, 2023-11.
https://www.biorxiv.org/content/10.1101/2023.11.09.566307v2.full
*2i: CHIR99021 and PD0325901 from Axon Medchem
Yoshimatsu, S., Nakajima, M., Sonn, I., Natsume, R., Sakimura, K., Nakatsukasa, E., ... & Okano, H. (2023). Attempts for deriving extended pluripotent stem cells from common marmoset embryonic stem cells. Genes to Cells, 28(2), 156-169.
https://onlinelibrary.wiley.com/doi/full/10.1111/gtc.13000
Etxaniz Díaz de Durana, J. (2023). A Comparative Study Of Cell Culture Conditions During Conversion From Primed To Naive Human Pluripotent Stem Cells.
https://addi.ehu.es/bitstream/handle/10810/60210/TFM-Jone%20Etxaniz%20.pdf?sequence=1&isAllowed=y
CHIR99021, PD0325901, SP600125, BIRB796, Y27632, GO6983 from Axon Medchem
Mergani, A., Meurer, M., Wiebe, E., Dümmer, K., Wirz, K., Lehmann, J., ... & Seeger, B. (2023). Alteration of cholesterol content and oxygen level in intestinal organoids after infection with Staphylococcus aureus. The FASEB Journal, 37(12), e23279.
https://faseb.onlinelibrary.wiley.com/doi/full/10.1096/fj.202300799R
Iwatsuki, K., Oikawa, M., Kobayashi, H., Penfold, C. A., Sanbo, M., Yamamoto, T., ... & Kobayashi, T. (2023). Rat post-implantation epiblast-derived pluripotent stem cells produce functional germ cells. Cell Reports Methods, 3(8).
https://www.cell.com/cell-reports-methods/pdf/S2667-2375(23)00179-0.pdf
*2i: CHIR99021 and PD0325901 from Axon Medchem
Beydag-Tasöz, B. S., D’Costa, J. V., Hersemann, L., Lee, B. H., Luppino, F., Kim, Y. H., ... & Grapin-Botton, A. (2023). Integrating single-cell imaging and RNA sequencing datasets links differentiation and morphogenetic dynamics of human pancreatic endocrine progenitors. Developmental Cell, 58(21), 2292-2308.
https://www.cell.com/developmental-cell/pdf/S1534-5807(23)00366-0.pdf
Zagare, A. (2023). Contribution of Type 2 Diabetes and genetic variants in LRRK2 and GBA to Parkinson's disease.
https://orbilu.uni.lu/bitstream/10993/58118/1/PhD_Thesis_Alise_Zagare_final.pdf
Cernko, M. T. Human induced pluripotent stem cell-derived β cells as model to investigate the role of genetic risk and environmental insults in the pathogenesis of type 2 diabetes.
https://unipub.uni-graz.at/obvugrhs/download/pdf/9264171?originalFilename=true
Zagare, A., Preciat, G., Nickels, S. L., Luo, X., Monzel, A. S., Gomez-Giro, G., ... & Schwamborn, J. C. (2023). Omics data integration suggests a potential idiopathic Parkinson’s disease signature. Communications Biology, 6(1), 1179.
https://www.nature.com/articles/s42003-023-05548-w
Cazottes, E., Alfeghaly, C., Rognard, C., Loda, A., Castel, G., Villacorta, L., ... & Rougeulle, C. (2023). Extensive remodelling of XIST regulatory networks during primate evolution. bioRxiv, 2023-12.
https://www.biorxiv.org/content/10.1101/2023.12.04.569904v1.full
Chemla, A., Arena, G., Sacripanti, G., Barmpa, K., Zagare, A., Garcia, P., ... & Saraiva, C. (2023). Parkinson's disease-related Miro1 mutation induces mitochondrial dysfunction and loss of dopaminergic neurons in vitro and in vivo. bioRxiv, 2023-12.
https://www.biorxiv.org/content/10.1101/2023.12.19.571978v1.full
Schüle, K. M., Weckerle, J., Probst, S., Wehmeyer, A. E., Zissel, L., Schröder, C. M., ... & Arnold, S. J. (2023). Eomes restricts Brachyury functions at the onset of mouse gastrulation. Developmental Cell, 58(18), 1627-1642.
*2i: CHIR99021 and PD0325901 from Axon Medchem
Hosokawa, M., Mikawa, R., Hagiwara, A., Okuno, Y., Awaya, T., Yamamoto, Y., ... & Hagiwara, M. (2023). Cryptotanshinone is a candidate therapeutic agent for interstitial lung disease associated with a BRICHOS-domain mutation of SFTPC. Iscience, 26(10).
https://www.cell.com/iscience/pdf/S2589-0042(23)01808-4.pdf
Papadopoulou, M. A., Rogdakis, T., Charou, D., Peteinareli, M., Ntarntani, K., Gravanis, A., ... & Charalampopoulos, I. (2023). Neurotrophin Analog ENT-A044 Activates the p75 Neurotrophin Receptor Promoting Cell Death in Mouse and Human Neuronal Cells.
https://www.mdpi.com/1422-0067/24/14/11683
Katsuda, T., Sussman, J., Li, J., Merrell, A. J., Vostrejs, W. P., Secreto, A., ... & Stanger, B. Z. (2023). Evidence for in vitro extensive proliferation of adult hepatocytes and biliary epithelial cells. Stem cell reports, 18(7), 1436-1450.
https://www.cell.com/stem-cell-reports/pdf/S2213-6711(23)00195-9.pdf
Wenger, A., Biran, A., Alcaraz, N., Redó-Riveiro, A., Sell, A. C., Krautz, R., ... & Groth, A. (2023). Symmetric inheritance of parental histones governs epigenome maintenance and embryonic stem cell identity. Nature Genetics, 55(9), 1567-1578.
https://www.nature.com/articles/s41588-023-01476-x
Tsujino, S., Deguchi, S., Nomai, T., Padilla-Blanco, M., Plianchaisuk, A., Wang, L., ... & Sato, K. (2023). Virological characteristics of the SARS-CoV-2 Omicron EG. 5.1 variant. bioRxiv, 2023-10.
https://www.biorxiv.org/content/10.1101/2023.10.19.563209v1.full
Lee-Glover, L. P. (2023). Mitochondrial dysfunction and steroidogenesis in Parkinson disease.
https://prism.ucalgary.ca/bitstreams/acbdb49d-8e13-415c-9d42-1231c090b0da/download
Dinarello, A., Betto, R. M., Diamante, L., Tesoriere, A., Ghirardo, R., Cioccarelli, C., ... & Argenton, F. (2023). STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia. Cell Death Discovery, 9(1), 226.
https://www.nature.com/articles/s41420-023-01507-w
*2i: CHIR99021 and PD0325901 from Axon Medchem
Knudsen, T. E., Hamilton, W. B., Proks, M., Lykkegaard, M., Linneberg-Agerholm, M., Nielsen, A. V., ... & Brickman, J. M. (2023). A bipartite function of ESRRB can integrate signaling over time to balance self-renewal and differentiation. Cell Systems, 14(9), 788-805.
https://www.biorxiv.org/content/10.1101/2022.09.20.508291v1.full
*2i: CHIR99021 and PD0325901 from Axon Medchem
Jiménez, S., Schreiber, V., Mercier, R., Gradwohl, G., & Molina, N. (2023). Characterization of cell-fate decision landscapes by estimating transcription factor dynamics. Cell Reports Methods, 3(7).
https://www.cell.com/cell-reports-methods/pdf/S2667-2375(23)00141-8.pdf
Yayli, G., Bernardini, A., Sanchez, P. K. M., Scheer, E., Damilot, M., Essabri, K., ... & Tora, L. (2023). ATAC and SAGA co-activator complexes utilize co-translational assembly, but their cellular localization properties and functions are distinct. Cell reports, 42(9).
https://www.cell.com/cell-reports/pdf/S2211-1247(23)01110-5.pdf
*2i: CHIR99021 and PD0325901 from Axon Medchem
Argenton, F., Martello, G., Tiso, N., Dinarello, A., Betto, R., Meneghetti, G., ... & Tesoriere, A. (2023). STAT3 and HIF1α cooperatively mediate the transcriptional and physiological responses to hypoxia.
https://www.researchsquare.com/article/rs-2727132/v1
*2i: CHIR99021 and PD0325901 from Axon Medchem
Hartleb, A. (2023). Auswirkungen eines Tandem-Peptids auf den intrazellulären Kalziumhaushalt und Arrhythmien von humanen iPS-Kardiomyozyten mit Mutationen in desmosomalen Proteinen (Doctoral dissertation, Universität Würzburg).
https://opus.bibliothek.uni-wuerzburg.de/opus4-wuerzburg/frontdoor/deliver/index/docId/31657/file/Hartleb_Annika_Tandem-Peptid.pdf
Alonso Alonso, S. Análisis del potencial de los blastómeros del embrión de ratón a 8 células para generar células madre embrionarias.
https://www.tdx.cat/bitstream/handle/10803/689656/saa1de1.pdf?sequence=1&isAllowed=y
*2i: CHIR99021 and PD0325901 from Axon Medchem
Almeida, C. F., Robriquet, F., Vetter, T. A., Huang, N., Neinast, R., Hernandez-Rosario, L., ... & Wein, N. (2023). Promising AAV. U7snRNAs vectors targeting DMPK improve DM1 hallmarks in patient-derived cell lines. Frontiers in Cell and Developmental Biology, 11, 1181040.
https://www.frontiersin.org/articles/10.3389/fcell.2023.1181040/full
Higashitani, Y., & Horie, K. (2023). Long-read sequence analysis of MMEJ-mediated CRISPR genome editing reveals complex on-target vector insertions that may escape standard PCR-based quality control. bioRxiv, 2023-03.
https://www.biorxiv.org/content/10.1101/2023.03.03.531065.abstract
* 2i: PD0325901 and CHIR99021 from Axon Medchem
Zhou, J., Cui, B., Wang, X., Wang, H., Zheng, J., Guo, F., ... & Liang, P. (2023). Overexpression of KCNJ2 enhances maturation of human-induced pluripotent stem cell-derived cardiomyocytes. Stem Cell Research & Therapy, 14(1), 92.
https://link.springer.com/article/10.1186/s13287-023-03312-9
Ugur, E., de la Porte, A., Qin, W., Bultmann, S., Ivanova, A., Drukker, M., ... & Leonhardt, H. (2023). Comprehensive chromatin proteomics resolves functional phases of pluripotency and identifies changes in regulatory components. Nucleic Acids Research, 51(6), 2671-2690.
https://academic.oup.com/nar/article-pdf/51/6/2671/49761391/gkad058.pdf
* 2i : PD0325901 and CHIR99021 from Axon Medchem
Mizuno, K., Ohnishi, H., Yoshimatsu, M., Zhao, C., Hayashi, Y., Kuwata, F., ... & Omori, K. (2023). Laryngeal Cartilage Regeneration of Nude Rats by Transplantation of Mesenchymal Stem Cells Derived from Human-Induced Pluripotent Stem Cells. Cell Transplantation, 32, 09636897231178460.
https://journals.sagepub.com/doi/full/10.1177/09636897231178460
Ying, H., Guo, W., Tang, X., Pan, J., Yu, P., Fan, H., ... & Liang, P. (2023). Colchicine attenuates the electrical remodeling of post-operative atrial fibrillation through inhibited expression of immune-related hub genes and stabilization of microtubules. International Journal of Biological Sciences, 19(9), 2934.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10266076/
Sieliwonczyk, E., Alaerts, M., Simons, E., Snyders, D., Nijak, A., Vandendriessche, B., ... & Loeys, B. (2023). Clinical and functional characterisation of a recurrent KCNQ1 variant in the Belgian population. Orphanet Journal of Rare Diseases, 18(1), 1-12.
https://ojrd.biomedcentral.com/articles/10.1186/s13023-023-02618-4
Zorzan, I., Betto, R. M., Rossignoli, G., Arboit, M., Drusin, A., Corridori, C., ... & Martello, G. (2023). Chemical conversion of human conventional PSCs to TSCs following transient naive gene activation. EMBO reports, 24(4), e55235.
https://www.embopress.org/doi/full/10.15252/embr.202255235
* PD0325901, XAV939, GO6983, Y27632, CHIR99021, A83-01 and SB431542 from Axon Medchem
de Jong, M. A., Adegeest, E., Bérenger-Currias, N. M., Mircea, M., Merks, R. M., & Semrau, S. (2023). A combination of convergent extension and differential adhesion explains the shapes of elongating gastruloids. bioRxiv, 2023-05.
https://www.biorxiv.org/content/10.1101/2023.05.24.541949.abstract
Capinha, L., Zhang, Y., Holzer, A. K., Ückert, A. K., Zana, M., Carta, G., ... & Jennings, P. (2023). Transcriptomic-based evaluation of trichloroethylene glutathione and cysteine conjugates demonstrate phenotype-dependent stress responses in a panel of human in vitro models. Archives of Toxicology, 97(2), 523-545.
https://link.springer.com/article/10.1007/s00204-022-03436-6
Delás, M. J., Kalaitzis, C. M., Fawzi, T., Demuth, M., Zhang, I., Stuart, H. T., ... & Briscoe, J. (2023). Developmental cell fate choice in neural tube progenitors employs two distinct cis-regulatory strategies. Developmental Cell, 58(1), 3-17.
https://www.sciencedirect.com/science/article/pii/S1534580722008164
Ribeiro, J., & Crossan, G. P. (2023). GCNA is a histone binding protein required for spermatogonial stem cell maintenance. Nucleic Acids Research, 51(10), 4791-4813.
https://academic.oup.com/nar/article/51/10/4791/7078046
* PD0325901 and CHIR99021 from Axon Medchem
Baden, P., Perez, M. J., Raji, H., Bertoli, F., Kalb, S., Illescas, M., ... & Deleidi, M. (2023). Glucocerebrosidase is imported into mitochondria and preserves complex I integrity and energy metabolism. Nature Communications, 14(1), 1930.
https://www.nature.com/articles/s41467-023-37454-4
van Amerongen, R. A., Morton, L. T., Chaudhari, U. G., Remst, D. F., Hagedoorn, R. S., van den Berg, C. W., ... & Heemskerk, M. H. (2023). Human iPSC-derived preclinical models to identify toxicity of tumor-specific T cells with clinical potential. Molecular Therapy-Methods & Clinical Development.
https://www.sciencedirect.com/science/article/pii/S2329050123000074
Ballmer, D., Tardat, M., Ortiz, R., Graff-Meyer, A., Ozonov, E. A., Genoud, C., ... & Fanourgakis, G. (2023). HP1 proteins regulate nucleolar structure and function by secluding pericentromeric constitutive heterochromatin. Nucleic Acids Research, 51(1), 117-143.
https://academic.oup.com/nar/article/51/1/117/6931869
* CHIR99021 and PD184352 from Axon Medchem
Sakuma, K., Tsubooka-Yamazoe, N., Hashimoto, K., Sakai, N., Asano, S., Watanabe-Matsumoto, S., ... & Toyoda, T. (2023). CDK8/19 inhibition plays an important role in pancreatic β-cell induction from human iPSCs. Stem Cell Research & Therapy, 14(1), 1.
https://link.springer.com/article/10.1186/s13287-022-03220-4
Sun, J., Osenberg, S., Irwin, A., Ma, L. H., Lee, N., Xiang, Y., ... & Ballas, N. (2023). Mutations in the transcriptional regulator MeCP2 severely impact key cellular and molecular signatures of human astrocytes during maturation. Cell Reports, 42(1), 111942.
https://www.sciencedirect.com/science/article/pii/S2211124722018435
Kaemena, D. F., Yoshihara, M., Beniazza, M., Ashmore, J., Zhao, S., Bertenstam, M., ... & Kaji, K. (2023). B1 SINE-binding ZFP266 impedes mouse iPSC generation through suppression of chromatin opening mediated by reprogramming factors. Nature Communications, 14(1), 488.
https://www.nature.com/articles/s41467-023-36097-9
* 2i: PD0325901 and CHIR99021 from Axon Medchem
Schüle, K. M., Weckerle, J., Probst, S., Wehmeyer, A. E., Zissel, L., Schröder, C. M., ... & Arnold, S. J. (2023). Eomes restricts Brachyury functions at the onset of mammalian gastrulation. bioRxiv, 2023-01.
https://www.biorxiv.org/content/10.1101/2023.01.27.525830.abstract
* 2i: PD0325901 and CHIR99021 from Axon Medchem
Messelodi, D., Strocchi, S., Bertuccio, S. N., Baden, P., Indio, V., Giorgi, F. M., ... & Pession, A. (2023). Neuronopathic Gaucher disease models reveal defects in cell growth promoted by Hippo pathway activation. Communications Biology, 6(1), 431.
https://www.nature.com/articles/s42003-023-04813-2
Breitmeyer, R., Vogel, S., Heider, J., Hartmann, S. M., Wüst, R., Keller, A. L., ... & Volkmer, H. (2023). Regulation of synaptic connectivity in schizophrenia spectrum by mutual neuron-microglia interaction. Communications Biology, 6(1), 472.
https://www.nature.com/articles/s42003-023-04852-9
Ito, R., Kimura, A., Hirose, Y., Hatano, Y., Mima, A., Mae, S. I., ... & Osafune, K. (2023). Elucidation of HHEX in pancreatic endoderm differentiation using a human iPSC differentiation model. Scientific Reports, 13(1), 8659.
https://www.nature.com/articles/s41598-023-35875-1
Ensinck, I., Sideri, T., Modic, M., Capitanchik, C., Vivori, C., Toolan-Kerr, P., & van Werven, F. J. (2023). m6A-ELISA, a simple method for quantifying N6-methyladenosine from mRNA populations. RNA, 29(5), 705-712.
https://rnajournal.cshlp.org/content/29/5/705.full
Park, P. J., & Christopher, C. A. W. Single-cell genome sequencing of human neurons identifies somatic point mutation and indel enrichment in regulatory 2 elements 3.
https://biblio.ugent.be/publication/8771508/file/8771527.pdf
Sambri, I., Ferniani, M., Campostrini, G., Testa, M., Meraviglia, V., de Araujo, M. E., ... & Ballabio, A. (2023). RagD auto-activating mutations impair MiT/TFE activity in kidney tubulopathy and cardiomyopathy syndrome. Nature Communications, 14(1), 2775.
https://www.nature.com/articles/s41467-023-38428-2
Linneberg-Agerholm, M., Sell, A. C., Redo-Riveiro, A., Proks, M., Knudsen, T. E., Perera, M., & Brickman, J. M. (2023). Enhancer status in the primitive endoderm supports unrestricted lineage plasticity in regulative development. bioRxiv, 2023-05.
https://www.biorxiv.org/content/10.1101/2023.05.20.540779.abstract
Meier, A. B., Zawada, D., De Angelis, M. T., Martens, L. D., Santamaria, G., Zengerle, S., ... & Moretti, A. (2023). Epicardioid single-cell genomics uncovers principles of human epicardium biology in heart development and disease. Nature Biotechnology, 1-14.
https://www.nature.com/articles/s41587-023-01718-7
Arena, G., Landoulsi, Z., Grossmann, D., Vitali, A., Delcambre, S., Baron, A., ... & Gruenewald, A. (2023). Polygenic risk scores validated in patient-derived cells stratify for mitochondrial subtypes of Parkinson's disease. medRxiv, 2023-05.
https://www.medrxiv.org/content/10.1101/2023.05.12.23289877.abstract
van der Veer, B. K., Chen, L., Custers, C., Athanasouli, P., Schroiff, M., Cornelis, R., ... & Koh, K. P. (2023). Dual functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation. Nucleic Acids Research, gkad231.
https://academic.oup.com/nar/advance-article-abstract/doi/10.1093/nar/gkad231/7109501
Rivera‐Arbeláez, J. M., Keekstra, D., Cofiño‐Fabres, C., Boonen, T., Dostanic, M., Ten Den, S. A., ... & Passier, R. (2023). Automated assessment of human engineered heart tissues using deep learning and template matching for segmentation and tracking. Bioengineering & Translational Medicine, e10513.
https://aiche.onlinelibrary.wiley.com/doi/abs/10.1002/btm2.10513
Jones, C., Avino, M., Giroux, V., & Boudreau, F. (2023). HNF4α acts as upstream functional regulator of intestinal Wnt3 and paneth cell fate. Cellular and Molecular Gastroenterology and Hepatology, 15(3), 593-612.
https://www.sciencedirect.com/science/article/pii/S2352345X22002466
Arena, G., Landoulsi, Z., Grossmann, D., Vitali, A., Delcambre, S., Baron, A., ... & Grünewald, A. (2023). Polygenic risk scores validated in patient-derived cells stratify for mitochondrial subtypes of Parkinson\textquoterights disease 2023.05. 12.23289877.
https://orbilu.uni.lu/bitstream/10993/55367/1/2023.05.12.23289877v1.full.pdf
Dane, T. L., Gill, A. L., Vieira, F. G., & Denton, K. R. (2023). Reduced C9orf72 expression exacerbates polyGR toxicity in patient iPSC-derived motor neurons and a Type I protein arginine methyltransferase inhibitor reduces that toxicity. Frontiers in Cellular Neuroscience, 17, 1134090.
https://www.frontiersin.org/articles/10.3389/fncel.2023.1134090/full
Hermann, F. M., Kjærgaard, M. F., Tian, C., Tiemann, U., Jackson, A., Olsen, L. R., ... & Semb, H. (2023). An insulin hypersecretion phenotype precedes pancreatic β cell failure in MODY3 patient-specific cells. Cell Stem Cell, 30(1), 38-51.
https://www.sciencedirect.com/science/article/pii/S1934590922004854
* CHIR99021 and R428 from Axon Medchem
van Royen, M. E., IJcken, W. F. J., French, P., Bedalov, A., & Gribnau, J. H. Mira-Bontenbal,* B. Tan, C. Gontan, S. Goossens, RG Boers, JB Boers, C. Dupont.
https://pure.eur.nl/ws/files/80795622/PIIS2213671122000522.pdf
Tamura, T., Ito, J., Uriu, K., Zahradnik, J., Kida, I., Anraku, Y., ... & Sato, K. (2023). Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants. Nature communications, 14(1), 2800.
https://www.nature.com/articles/s41467-023-38435-3
Kranaster, P., Blum, J., Dold, J. E., Wittmann, V., & Leist, M. (2023). Use of metabolic glycoengineering and pharmacological inhibitors to assess lipid and protein sialylation on cells. Journal of Neurochemistry, 164(4), 481-498.
https://onlinelibrary.wiley.com/doi/abs/10.1111/jnc.15737
Lechado-Terradas, A., Schepers, S., Zittlau, K. I., Sharma, K., Ok, O., Fitzgerald, J. C., ... & Kahle, P. J. (2022). Parkin-dependent mitophagy occurs via proteasome-dependent steps sequentially targeting separate mitochondrial sub-compartments for autophagy. Autophagy Reports, 1(1), 576-602.
https://www.tandfonline.com/doi/abs/10.1080/27694127.2022.2143214
Ito, J., Suzuki, R., Uriu, K., Itakura, Y., Zahradnik, J., Kimura, K. T., ... & Sato, K. (2023). Convergent evolution of SARS-CoV-2 Omicron subvariants leading to the emergence of BQ. 1.1 variant. Nature communications, 14(1), 2671.
https://www.nature.com/articles/s41467-023-38188-z
Patberg, M., Oniani, T., Disse, P., Peischard, S., Vinnenberg, L., Zobeiri, M., ... & Junker, A. (2023). Optimized synthesis and pharmacological evaluation of HCN channel inhibitor EC18. Archiv der Pharmazie, 356(6), 2200665.
https://onlinelibrary.wiley.com/doi/abs/10.1002/ardp.202200665
Tasca, F. Shepherding precision gene editing ith CRISPR-Cas9 ariants and adeno iral ectors.
https://scholarlypublications.universiteitleiden.nl/access/item%3A3620385/download
Katsuda, T., Li, J., Merrell, A. J., Sussman, J., Matsuzaki, J., Ochiya, T., & Stanger, B. Z. (2023). Evidence for in vitro extensive proliferation of adult hepatocytes and biliary epithelial cells. bioRxiv, 2023-01.
https://www.biorxiv.org/content/10.1101/2023.01.03.522656.abstract
Gil, N., Perry, R. B. T., Mukamel, Z., Tuck, A., Bühler, M., & Ulitsky, I. (2023). Complex regulation of Eomes levels mediated through distinct functional features of the Meteor long non-coding RNA locus. Cell Reports, 42(6).
https://www.cell.com/cell-reports/pdf/S2211-1247(23)00580-6.pdf
* PD0325901, CHIR99021 and Y27632 from Axon Medchem
Sierra-Delgado, J. A., Sinha-Ray, S., Kaleem, A., Ganjibakhsh, M., Parvate, M., Powers, S., ... & Meyer, K. (2023). In Vitro Modeling as a Tool for Testing Therapeutics for Spinal Muscular Atrophy and IGHMBP2-Related Disorders. Biology, 12(6), 867.
https://www.mdpi.com/2079-7737/12/6/867
Zittlau, K. I. (2023). Temporal analysis of parkin-dependent mitophagy using mass spectrometry-based proteomics(Doctoral dissertation, Universität Tübingen).
https://tobias-lib.ub.uni-tuebingen.de/xmlui/handle/10900/136757
Robertson, F. L., O’Duibhir, E., Gangoso, E., Bressan, R. B., Bulstrode, H., Marqués-Torrejón, M. Á., ... & Pollard, S. M. (2023). Elevated FOXG1 in glioblastoma stem cells cooperates with Wnt/β-catenin to induce exit from quiescence. Cell Reports, 42(6).
https://www.cell.com/cell-reports/pdf/S2211-1247(23)00572-7.pdf
Schwarz, L. (2023). Miro1-mutant iPSC-derived Neurons reveal novel functions of Miro1 in mitochondrial respiration and dopamine handling (Doctoral dissertation, Universität Tübingen).
https://tobias-lib.ub.uni-tuebingen.de/xmlui/handle/10900/138359
* dorsomorphin and CHIR99021 from Axon medchem
Sinenko, S. A., Kuzmin, A. A., Skvortsova, E. V., Ponomartsev, S. V., Efimova, E. V., Bader, M., ... & Tomilin, A. N. (2023). Tryptophan hydroxylase-2-mediated serotonin biosynthesis suppresses cell reprogramming into pluripotent state. International Journal of Molecular Sciences, 24(5), 4862.
https://www.mdpi.com/1422-0067/24/5/4862
* 2i: PD0325901 and CHIR99021 from Axon Medchem
Zujur, D., Al-Akashi, Z., Nakamura, A., Zhao, C., Takahashi, K., Aritomi, S., ... & Ikeya, M. (2023). Enhanced chondrogenic differentiation of iPS cell-derived mesenchymal stem/stromal cells via neural crest cell induction for hyaline cartilage repair. Frontiers in Cell and Developmental Biology, 11, 1140717.
https://www.frontiersin.org/articles/10.3389/fcell.2023.1140717/full
Miyashita, R., Nishiyama, A., Qin, W., Chiba, Y., Kori, S., Kato, N., ... & Nakanishi, M. (2023). The termination of UHRF1-dependent PAF15 ubiquitin signaling is regulated by USP7 and ATAD5. Elife, 12, e79013.
https://elifesciences.org/articles/79013
* 2i: PD0325901 and CHIR99021 from Axon Medchem
Γκουγκούσης, Χ. (2023). Πρωτεωμικός χαρακτηρισμός καρδιομυοκυττάρων προερχόμενων από εμβρυονικά βλαστικά κύτταρα ανθρώπου (Master's thesis).
https://olympias.lib.uoi.gr/jspui/bitstream/123456789/32597/4/Μ.Ε.%20ΓΚΟΥΓΚΟΥΣΗΣ%20ΧΡΗΣΤΟΣ%202023.pdf
Sato, S., Hishida, T., Kinouchi, K., Hatanaka, F., Li, Y., Nguyen, Q., ... & Sassone-Corsi, P. (2023). The circadian clock CRY1 regulates pluripotent stem cell identity and somatic cell reprogramming. Cell Reports, 42(6).
https://www.cell.com/cell-reports/pdf/S2211-1247(23)00601-0.pdf
* CHIR99021 and SB202190 from Axon Medchem
Bernardini, A., Mukherjee, P., Scheer, E., Kamenova, I., Antonova, S., Sanchez, P. K. M., ... & Tora, L. (2023). Hierarchical TAF1-dependent co-translational assembly of the basal transcription factor TFIID. bioRxiv, 2023-04.
https://www.biorxiv.org/content/10.1101/2023.04.05.535704.abstract
* 2i: PD0325901 and CHIR99021 from Axon Medchem
Luna Velez, M. V., Neikes, H. K., Snabel, R. R., Quint, Y., Qian, C., Martens, A., ... & Vermeulen, M. (2023). ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study. Nucleic Acids Research.
https://academic.oup.com/nar/advance-article-abstract/doi/10.1093/nar/gkac1236/6981654
Noviello, G., Gjaltema, R. A., & Schulz, E. G. (2023). CasTuner is a degron and CRISPR/Cas-based toolkit for analog tuning of endogenous gene expression. Nature Communications, 14(1), 3225.
https://www.nature.com/articles/s41467-023-38909-4
* 2i: PD0325901 and CHIR99021 from Axon Medchem
2022 (121 citations)
Romayor, I., Herrera, L., Burón, M., Martin-Inaraja, M., Prieto, L., Etxaniz, J., ... & Eguizabal, C. (2022). A Comparative Study of Cell Culture Conditions during Conversion from Primed to Naive Human Pluripotent Stem Cells. Biomedicines, 10(6), 1358.
https://www.mdpi.com/2227-9059/10/6/1358
* CHIR99021, PD0325901, Y27632, Go6983, SP600125 and BIRB796 from Axon Medchem
Zorzan, I., Betto, R. M., Rossignoli, G., Arboit, M., Drusin, A., Martini, P., & Martello, G. (2022). Chemical conversion of human conventional Pluripotent Stem Cells to Trophoblast Stem Cells. bioRxiv, 2022-04.
https://www.biorxiv.org/content/10.1101/2022.04.07.487453v1.full
*PD0325901, XAV939, Go6983, Y27632, CHIR99021, A83-01, SB431542 from Axon Medchem
Viukov, S., Shani, T., Bayerl, J., Sheban, D., Stelzer, Y., Novershtern, N., & Hanna, J. H. (2022). Human primed and naïve PSCs are both competent in differentiating into bona fide trophoblast stem cells. BioRxiv, 2022-05.
https://www.biorxiv.org/content/10.1101/2022.05.20.492766v1.full
*PD0325901, XAV939, GO6983, CGP77675, BIRB796, A883-01, CHIR99021, Y27632 from Axon Medchem
Takao, T., Yamada, D., & Takarada, T. (2022). A protocol to induce expandable limb-bud mesenchymal cells from human pluripotent stem cells. STAR protocols, 3(4), 101786.
https://www.sciencedirect.com/science/article/pii/S2666166722006669
Marini, V., Marino, F., Aliberti, F., Giarratana, N., Pozzo, E., Duelen, R., ... & Chai, Y. C. (2022). Long-term culture of patient-derived cardiac organoids recapitulated Duchenne muscular dystrophy cardiomyopathy and disease progression. Frontiers in Cell and Developmental Biology, 10, 878311.
https://www.frontiersin.org/articles/10.3389/fcell.2022.878311/full
Tada, T., Ohnishi, H., Yamamoto, N., Kuwata, F., Hayashi, Y., Okuyama, H., ... & Omori, K. (2022). Transplantation of a human induced pluripotent stem cell-derived airway epithelial cell sheet into the middle ear of rats. Regenerative Therapy, 19, 77-87.
https://www.sciencedirect.com/science/article/pii/S2352320422000013
Montero-Calle, P., Flandes-Iparraguirre, M., Mountris, K., S de la Nava, A., Laita, N., Rosales, R. M., ... & Mazo, M. M. (2022). Fabrication of human myocardium using multidimensional modelling of engineered tissues. Biofabrication, 14(4), 045017.
https://iopscience.iop.org/article/10.1088/1758-5090/ac8cb3/meta
* CHIR99021 and C59 from Axon Medchem
Viegas, J. O., Azad, G. K., Lv, Y., Fishman, L., Paltiel, T., Pattabiraman, S., ... & Meshorer, E. (2022). RNA degradation eliminates developmental transcripts during murine embryonic stem cell differentiation via CAPRIN1-XRN2. Developmental Cell, 57(24), 2731-2744.
https://www.sciencedirect.com/science/article/pii/S1534580722008140
* 2i: PD0325901 and CHIR99021 from Axon Medchem
Kuwata, F., Ohnishi, H., Yamamoto, N., Takezawa, T., Yamashita, M., Okuyama, H., ... & Omori, K. (2022). Transplantation of Human Induced Pluripotent Stem Cell-Derived Airway Cells on Vitrigel Membrane into Rat Nasal Cavity. Tissue Engineering Part A, 28(13-14), 586-594.
https://www.liebertpub.com/doi/abs/10.1089/ten.TEA.2021.0071
Stolz, P., Mantero, A. S., Tvardovskiy, A., Ugur, E., Wange, L. E., Mulholland, C. B., ... & Bultmann, S. (2022). TET1 regulates gene expression and repression of endogenous retroviruses independent of DNA demethylation. Nucleic Acids Research, 50(15), 8491-8511.
https://academic.oup.com/nar/article/50/15/8491/6651872
*2i; PD0325901 and CHIR99021 from Axon Medchem
Cao, X., Mircea, M., Yakala, G. K., van den Hil, F. E., Brescia, M., Mei, H., ... & Orlova, V. V. (2023). ETV2 upregulation marks the specification of early cardiomyocytes and endothelial cells during co-differentiation. Stem Cells, 41(2), 140-152.
https://academic.oup.com/stmcls/article/41/2/140/6895495
Tarazi, S., Aguilera-Castrejon, A., Joubran, C., Ghanem, N., Ashouokhi, S., Roncato, F., ... & Hanna, J. H. (2022). Post-gastrulation synthetic embryos generated ex utero from mouse naive ESCs. Cell, 185(18), 3290-3306.
https://www.sciencedirect.com/science/article/pii/S0092867422009813
* CHIR99021, PD0325901, Y27632 from Axon Medchem
Rousset, F., Schilardi, G., Sgroi, S., Nacher-Soler, G., Sipione, R., Kleinlogel, S., & Senn, P. (2022). WNT Activation and TGFβ-Smad Inhibition Potentiate Stemness of Mammalian Auditory Neuroprogenitors for High-Throughput Generation of Functional Auditory Neurons In Vitro. Cells, 11(15), 2431.
https://www.mdpi.com/2073-4409/11/15/2431
* CHIR99021, LND193189 and SB431542 from Axon Medchem
Miura, Y., Sato, M., Kuwahara, T., Ebata, T., Tabata, Y., & Sakurai, H. (2022). Transplantation of human iPSC-derived muscle stem cells in the diaphragm of Duchenne muscular dystrophy model mice. Plos one, 17(4), e0266391.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0266391
Peischard, S., Möller, M., Disse, P., Ho, H. T., Verkerk, A. O., Strutz-Seebohm, N., ... & Seebohm, G. (2022). Virus-induced inhibition of cardiac pacemaker channel HCN4 triggers bradycardia in human-induced stem cell system. Cellular and Molecular Life Sciences, 79(8), 440.
https://link.springer.com/article/10.1007/s00018-022-04435-7
* CHIR99021 and CID 1067700 (ML282) from Axon Medchem
Girard, O., Lavigne, R., Chevolleau, S., Onfray, C., Com, E., Schmit, P. O., ... & Pineau, C. (2022). Naive Pluripotent and Trophoblastic Stem Cell Lines as a Model for Detecting Missing Proteins in the Context of the Chromosome-Centric Human Proteome Project. Journal of proteome research.
https://pubs.acs.org/doi/abs/10.1021/acs.jproteome.2c00496
* PD0325901, XAV939, GO6983, Y27632 and CHIR99021 from Axon Medchem
Kuwata, F. (2022). Transplantation of human iPS cell-derived airway cells on vitrigel membrane into rat nasal cavity.
https://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/276161/1/digak04869.pdf
Alonso-Alonso, S., Santaló, J., & Ibáñez, E. (2022). Efficient generation of embryonic stem cells from single blastomeres of cryopreserved mouse embryos in the presence of signalling modulators. Reproduction, Fertility and Development, 34(7), 576-587.
https://www.publish.csiro.au/RD/RD21297
* 2i : PD0325901 and CHIR99021 from Axon Medchem
Trikalitis, V. D., Kroese, N. J., Kaya, M., Cofiño-Fabres, C., Ten Den, S., Khalil, I. S., ... & Rouwkema, J. (2022). Embedded 3D printing of dilute particle suspensions into dense complex tissue fibers using shear thinning xanthan baths. Biofabrication, 15(1), 015014.
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Luquette, L. J., Miller, M. B., Zhou, Z., Bohrson, C. L., Zhao, Y., Jin, H., ... & Park, P. J. (2022). Single-cell genome sequencing of human neurons identifies somatic point mutation and indel enrichment in regulatory elements. Nature Genetics, 54(10), 1564-1571.
https://www.nature.com/articles/s41588-022-01180-2
*2i; PD0325901 and CHIR99021 from Axon Medchem
Pham, T. X. A., Panda, A., Kagawa, H., Ertekin, C., Georgolopoulos, G., van Knippenberg, S. S., ... & Pasque, V. (2022). Modeling human extraembryonic mesoderm cells using naive pluripotent stem cells. Cell Stem Cell, 29(9), 1346-1365.
https://www.sciencedirect.com/science/article/pii/S193459092200337X
* PD0325901, SB431542, CHIR99021, from Axon Medchem
Wakimizu, T., Morikawa, K., Fukumura, K., Yuki, T., Adachi, T., Kurata, Y., ... & Shirayoshi, Y. (2022). SHOX2 refines the identification of human sinoatrial nodal cell population in the in vitro cardiac differentiation. Regenerative Therapy, 21, 239-249.
https://www.sciencedirect.com/science/article/pii/S2352320422000694
Coppiello, G., Barlabe, P., Moya-Jodar, M., Abizanda, G., Barreda, C., Iglesias, E., ... & Aranguren, X. L. (2022). In vivo generation of heart and vascular system by blastocyst complementation. bioRxiv, 2022-10.
https://www.biorxiv.org/content/10.1101/2022.10.04.510637.abstract
* 2i: PD0325901 and CHIR99021 from Axon Medchem
Hiltunen, A. E., Vuolteenaho, R., Ronkainen, V. P., Miinalainen, I., Uusimaa, J., Lehtonen, S., & Hinttala, R. (2022). Nhlrc2 is crucial during mouse gastrulation. genesis, 60(3), e23470.
https://onlinelibrary.wiley.com/doi/abs/10.1002/dvg.23470
* 2i: PD0325901 and CHIR99021 from Axon Medchem
Rivera-Arbeláez, J. M., Cofiño-Fabres, C., Schwach, V., Boonen, T., Ten Den, S. A., Vermeul, K., ... & Passier, R. (2022). Contractility analysis of human engineered 3D heart tissues by an automatic tracking technique using a standalone application. Plos one, 17(4), e0266834.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0266834
Gu, Y., Zhou, Y., Ju, S., Liu, X., Zhang, Z., Guo, J., ... & Hu, Z. (2022). Multi-omics profiling visualizes dynamics of cardiac development and functions. Cell Reports, 41(13), 111891.
https://www.sciencedirect.com/science/article/pii/S2211124722017909
Zagare, A., Barmpa, K., Smajic, S., Smits, L. M., Grzyb, K., Grünewald, A., ... & Schwamborn, J. C. (2022). Midbrain organoids mimic early embryonic neurodevelopment and recapitulate LRRK2-p. Gly2019Ser-associated gene expression. The American Journal of Human Genetics, 109(2), 311-327.
https://www.sciencedirect.com/science/article/pii/S000292972100464X
van Neerven, S. M., Smit, W. L., van Driel, M. S., Kakkar, V., de Groot, N. E., Nijman, L. E., ... & Vermeulen, L. (2022). Intestinal Apc‐inactivation induces HSP25 dependency. EMBO Molecular Medicine, e16194.
https://www.embopress.org/doi/full/10.15252/emmm.202216194
Tamai, K., Sakai, K., Yamaki, H., Moriguchi, K., Igura, K., Maehana, S., ... & Gotoh, S. (2022). iPSC-derived mesenchymal cells that support alveolar organoid development. Cell Reports Methods, 2(10), 100314.
https://www.sciencedirect.com/science/article/pii/S2667237522002041
Cao, X., & Mircea, M. (2022). akala, GK, Hil, FE an den, Brescia, M. Mei, HL,… Orlo a, 5, 140-152.
https://scholarlypublications.universiteitleiden.nl/access/item%3A3594532/download
Kwok, C. K., Sébastien, I., Hariharan, K., Meiser, I., Wihan, J., Altmaier, S., ... & Zimmermann, H. (2022). Scalable expansion of iPSC and their derivatives across multiple lineages. Reproductive Toxicology, 112, 23-35.
https://www.sciencedirect.com/science/article/pii/S0890623822000685
Hauth, A., Galupa, R., Servant, N., Villacorta, L., Hauschulz, K., van Bemmel, J. G., ... & Heard, E. (2022). Deciphering High-Resolution 3D Chromatin Organization via Capture Hi-C. JoVE (Journal of Visualized Experiments), (188), e64166.
https://www.jove.com/t/64166/deciphering-high-resolution-3d-chromatin-organization-via-capture-hi-c
* 2i: PD0325901 and CHIR99021 from Axon Medchem
Bérenger-Currias, N. M., Mircea, M., Adegeest, E., van den Berg, P. R., Feliksik, M., Hochane, M., ... & Semrau, S. (2022). A gastruloid model of the interaction between embryonic and extra-embryonic cell types. Journal of Tissue Engineering, 13, 20417314221103042.
https://journals.sagepub.com/doi/pdf/10.1177/20417314221103042
Dekel, C., Morey, R., Hanna, J., Laurent, L. C., Ben-Yosef, D., & Amir, H. (2022). Stabilization of hESCs in two distinct substates along the continuum of pluripotency. Iscience, 25(12), 105469.
https://www.sciencedirect.com/science/article/pii/S2589004222017412
* CHIR99021, PD0325901, BIRB796, CGP77675 and Y27632 from Axon Medchem
Kamiya, D., Takenaka-Ninagawa, N., Motoike, S., Kajiya, M., Akaboshi, T., Zhao, C., ... & Ikeya, M. (2022). Induction of functional xeno-free MSCs from human iPSCs via a neural crest cell lineage. npj Regenerative Medicine, 7(1), 47.
https://www.nature.com/articles/s41536-022-00241-8
Higa, T., Okita, Y., Matsumoto, A., Nakayama, S., Oka, T., Sugahara, O., ... & Nakayama, K. I. (2022). Spatiotemporal reprogramming of differentiated cells underlies regeneration and neoplasia in the intestinal epithelium. Nature communications, 13(1), 1500.
https://www.nature.com/articles/s41467-022-29165-z
López-Muneta, L., Linares, J., Casis, O., Martínez-Ibáñez, L., González Miqueo, A., Bezunartea, J., ... & Carvajal-Vergara, X. (2022). Generation of NKX2. 5GFP reporter human iPSCs and differentiation into functional cardiac fibroblasts. Frontiers in Cell and Developmental Biology, 9, 3669.
https://www.frontiersin.org/articles/10.3389/fcell.2021.797927/full
Blanch-Asensio, A., Grandela, C., Brandão, K. O., de Korte, T., Mei, H., Ariyurek, Y., ... & Davis, R. P. (2022). STRAIGHT-IN enables high-throughput targeting of large DNA payloads in human pluripotent stem cells. Cell Reports Methods, 2(10), 100300.
https://www.sciencedirect.com/science/article/pii/S2667237522001825
Spreng, A. S., Brüll, M., Leisner, H., Suciu, I., & Leist, M. (2022). Distinct and Dynamic Transcriptome Adaptations of iPSC-Generated Astrocytes after Cytokine Stimulation. Cells 2022, 11, 2644.
https://kops.uni-konstanz.de/server/api/core/bitstreams/25d55d0c-2b3c-448e-a44b-ac4f70eebe67/content
Yue, Z. H. O. U., Chen, C. H. E. N. G., Enlin, Z. H. E. N. G., Zhuo, M. E. N. G., Jian, W. A. N. G., Qingjie, W. A. N. G., & Yongning, H. E. (2022). Exploring potential new receptors for ELABELA in human embryonic stem cells by Crispr/Cas9-mediated gene editing system. Journal of Shanghai Jiao Tong University (Medical Science), 42(9), 1258.
https://xuebao.shsmu.edu.cn/EN/abstract/abstract13498.shtml
Yoshida, Y., Takahashi, M., Yamanishi, H., Nakazawa, Y., Kishimoto, J., & Ohyama, M. (2022). Changes in the Expression of Smooth Muscle Cell–Related Genes in Human Dermal Sheath Cup Cells Associated with the Treatment Outcome of Autologous Cell–Based Therapy for Male and Female Pattern Hair Loss. International Journal of Molecular Sciences, 23(13), 7125.
https://www.mdpi.com/1422-0067/23/13/7125
Zijlmans, D. W., Talon, I., Verhelst, S., Bendall, A., Van Nerum, K., Javali, A., ... & Pasque, V. (2022). Integrated multi-omics reveal polycomb repressive complex 2 restricts human trophoblast induction. Nature Cell Biology, 24(6), 858-871.
https://www.nature.com/articles/s41556-022-00932-w
* PD0325901, CHIR99021 and SB431542 from Axon Medchem
Costamagna, D., Casters, V., Beltrà, M., Sampaolesi, M., Van Campenhout, A., Ortibus, E., ... & Duelen, R. (2022). Autologous iPSC-Derived Human Neuromuscular Junction to Model the Pathophysiology of Hereditary Spastic Paraplegia. Cells, 11(21), 3351.
https://www.mdpi.com/1903718
Li, J., Wiesinger, A., Fokkert, L., Boukens, B. J., Verkerk, A. O., Christoffels, V. M., ... & Devalla, H. D. (2022). Molecular and electrophysiological evaluation of human cardiomyocyte subtypes to facilitate generation of composite cardiac models. Journal of Tissue Engineering, 13, 20417314221127908.
https://journals.sagepub.com/doi/pdf/10.1177/20417314221127908
Tasca, F., Brescia, M., Wang, Q., Liu, J., Janssen, J. M., Szuhai, K., & Gonçalves, M. A. (2022). Large-scale genome editing based on high-capacity adenovectors and CRISPR-Cas9 nucleases rescues full-length dystrophin synthesis in DMD muscle cells. Nucleic Acids Research, 50(13), 7761-7782.
https://academic.oup.com/nar/article-abstract/50/13/7761/6625817
Wu, X., Ciminieri, C., Bos, I. S. T., Woest, M. E., D'Ambrosi, A., Wardenaar, R., ... & Gosens, R. (2022). Diesel exhaust particles distort lung epithelial progenitors and their fibroblast niche. Environmental Pollution, 305, 119292.
https://www.sciencedirect.com/science/article/pii/S0269749122005061
Tamura, T., Yamasoba, D., Oda, Y., Ito, J., Kamasaki, T., Nao, N., ... & Fukuhara, T. (2022). Comparative pathogenicity of SARS-CoV-2 Omicron subvariants including BA. 1, BA. 2, and BA. 5. bioRxiv, 2022-08.
https://www.biorxiv.org/content/10.1101/2022.08.05.502758.abstract
Choy Buentello, D., Koch, L. S., Trujillo-de Santiago, G., Alvarez, M. M., & Broersen, K. (2022). Use of standard U-bottom and V-bottom well plates to generate neuroepithelial embryoid bodies. Plos one, 17(5), e0262062.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0262062
Smith, A. S., Luttrell, S. M., Dupont, J. B., Gray, K., Lih, D., Fleming, J. W., ... & Mack, D. L. (2022). High-throughput, real-time monitoring of engineered skeletal muscle function using magnetic sensing. Journal of Tissue Engineering, 13, 20417314221122127.
https://journals.sagepub.com/doi/pdf/10.1177/20417314221122127
Vivas, A., van den Berg, A., Passier, R., Odijk, M., & van der Meer, A. D. (2022). Fluidic circuit board with modular sensor and valves enables stand-alone, tubeless microfluidic flow control in organs-on-chips. Lab on a Chip, 22(6), 1231-1243.
https://pubs.rsc.org/en/content/articlehtml/2022/lc/d1lc00999k
Hiyoshi, H., Sakuma, K., Tsubooka-Yamazoe, N., Asano, S., Mochida, T., Yamaura, J., ... & Toyoda, T. (2022). Characterization and reduction of non-endocrine cells accompanying islet-like endocrine cells differentiated from human iPSC. Scientific Reports, 12(1), 4740.
https://www.nature.com/articles/s41598-022-08753-5
Nalbandian, M., Zhao, M., Kato, H., Jonouchi, T., Nakajima-Koyama, M., Yamamoto, T., & Sakurai, H. (2022). Single-cell RNA-seq reveals heterogeneity in hiPSC-derived muscle progenitors and E2F family as a key regulator of proliferation. Life Science Alliance, 5(8).
https://www.life-science-alliance.org/content/5/8/e202101312.abstract
Desloovere, K., Verfaillie, C. M., Sipido, K. R., Buyse, G. M., & Sampaolesi, M. Robin Duelen, Domiziana Costamagna, Guillaume Gilbert, 3 Liesbeth De Waele, 4 Nathalie Goemans, 4. Stem Cell Reports (2022), https://doi.org/10.1016/j.stemcr.2021.12.019
https://www.researchgate.net/profile/Robin-Duelen/publication/358187131_Human_iPSC_model_reveals_a_central_role_for_NOX4_and_oxidative_stress_in_Duchenne_cardiomyopathy/links/61f92001007fb504472ca672/Human-iPSC-model-reveals-a-central-role-for-NOX4-and-oxidative-stress-in-Duchenne-cardiomyopathy.pdf
Ozawa, M., Taguchi, J., Katsuma, K., Ishikawa-Yamauchi, Y., Kikuchi, M., Sakamoto, R., ... & Ikawa, M. (2022). Efficient simultaneous double DNA knock-in in murine embryonic stem cells by CRISPR/Cas9 ribonucleoprotein-mediated circular plasmid targeting for generating gene-manipulated mice. Scientific Reports, 12(1), 21558.
https://www.nature.com/articles/s41598-022-26107-z
Yoshimoto, Y., Uezumi, A., Ikemoto-Uezumi, M., Tanaka, K., Yu, X., Kurosawa, T., ... & Shukunami, C. (2022). Tenogenic Induction From Induced Pluripotent Stem Cells Unveils the Trajectory Towards Tenocyte Differentiation. Frontiers in Cell and Developmental Biology, 10, 780038.
https://www.frontiersin.org/articles/10.3389/fcell.2022.780038/pdf
Fujisawa, Y., Ming, L., Yamada, D., Takao, T., & Takarada, T. (2022). Establishment of a human pluripotent stem cell-derived MKX-td Tomato reporter system. Stem Cell Research & Therapy, 13(1), 1-8.
https://stemcellres.biomedcentral.com/articles/10.1186/s13287-022-03203-5
Hata, K., Kobayashi, N., Sugimura, K., Qin, W., Haxholli, D., Chiba, Y., ... & Arita, K. (2022). Structural basis for the unique multifaceted interaction of DPPA3 with the UHRF1 PHD finger. Nucleic Acids Research, 50(21), 12527-12542.
https://academic.oup.com/nar/article-abstract/50/21/12527/6845435
Skvortsova, E. V., Nazarov, I. B., Tomilin, A. N., & Sinenko, S. A. (2022). Dual Mode of Mitochondrial ROS Action during Reprogramming to Pluripotency. International Journal of Molecular Sciences, 23(18), 10924.
https://www.mdpi.com/1836184
* 2i; PD0325901 and CHIR99021 from Axon Medchem
Nijak, A., Simons, E., Vandendriessche, B., Van de Sande, D., Fransen, E., Sieliwończyk, E., ... & Loeys, B. L. (2022). Morpho-functional comparison of differentiation protocols to create iPSC-derived cardiomyocytes. Biology Open, 11(2), bio059016.
https://journals.biologists.com/bio/article-abstract/11/2/bio059016/274508
Aguilar, C., Pauzuolis, M., Pompaiah, M., Vafadarnejad, E., Arampatzi, P., Fischer, M., ... & Bartfeld, S. (2022). Helicobacter pylori shows tropism to gastric differentiated pit cells dependent on urea chemotaxis. Nature Communications, 13(1), 5878.
https://www.nature.com/articles/s41467-022-33165-4
Viukov, S., Shani, T., Bayerl, J., Aguilera-Castrejon, A., Oldak, B., Sheban, D., ... & Novershtern, N. (2022). Human primed and naïve PSCs are both able to differentiate into trophoblast stem cells. Stem cell reports, 17(11), 2484-2500.
https://www.sciencedirect.com/science/article/pii/S221367112200457X
* PD0325901, XAV939, Go6983, Y27632, CGP77675, PD173074 and CHIR99021 from Axon Medchem
Vierthaler, M. A. (2022). The influence of ADCK2 on melanoma cells and during the development to melanocytic progenitors (NCCs) (Doctoral dissertation).
https://archiv.ub.uni-heidelberg.de/volltextserver/31334/
Harberts, J., Siegmund, M., Hedrich, C., Kim, W., Fontcuberta i Morral, A., Zierold, R., & Blick, R. H. (2022). Generation of Human iPSC‐Derived Neurons on Nanowire Arrays Featuring Varying Lengths, Pitches, and Diameters. Advanced Materials Interfaces, 9(24), 2200806.
https://onlinelibrary.wiley.com/doi/abs/10.1002/admi.202200806
Ugur, E., de la Porte, A., Bultmann, S., Drukker, M., Mann, M., Wierer, M., & Leonhardt, H. (2022). Comprehensive chromatin proteomics resolves functional phases of pluripotency. bioRxiv, 2022-08.
https://www.biorxiv.org/content/10.1101/2022.08.08.503208v1.full
* 2i; CHIR99021 and PD0325901 from Axon Medchem
Kimura, I., Yamasoba, D., Tamura, T., Nao, N., Suzuki, T., Oda, Y., ... & Sato, K. (2022). Virological characteristics of the SARS-CoV-2 Omicron BA. 2 subvariants, including BA. 4 and BA. 5. Cell, 185(21), 3992-4007.
https://www.sciencedirect.com/science/article/pii/S0092867422011904
Delás, M. J., Kalaitzis, C. M., Fawzi, T., Demuth, M., Zhang, I., Stuart, H. T., ... & Briscoe, J. (2022). Developmental cell fate choice employs two distinct cis regulatory strategies. bioRxiv, 2022-06.
https://www.biorxiv.org/content/10.1101/2022.06.06.494792v1.full
Duelen, R., Costamagna, D., Gilbert, G., De Waele, L., Goemans, N., Desloovere, K., ... & Sampaolesi, M. (2022). Human iPSC model reveals a central role for NOX4 and oxidative stress in Duchenne cardiomyopathy. Stem Cell Reports, 17(2), 352-368.
https://www.sciencedirect.com/science/article/pii/S2213671121006585
Ray, S. S., Dutta, D., Dennys, C., Powers, S., Roussel, F., Lisowski, P., ... & Meyer, K. C. (2022). Mechanisms of IRF2BPL-related disorders and identification of a potential therapeutic strategy. Cell Reports, 41(10), 111751.
https://www.sciencedirect.com/science/article/pii/S2211124722016345
Spreng, A. S., Brüll, M., Leisner, H., Suciu, I., & Leist, M. (2022). Distinct and Dynamic Transcriptome Adaptations of iPSC-Generated Astrocytes after Cytokine Stimulation. Cells, 11(17), 2644.
https://www.mdpi.com/2073-4409/11/17/2644
Gjaltema, R. A., Schwämmle, T., Kautz, P., Robson, M., Schöpflin, R., Lustig, L. R., ... & Schulz, E. G. (2022). Distal and proximal cis-regulatory elements sense X chromosome dosage and developmental state at the Xist locus. Molecular Cell, 82(1), 190-208
https://www.sciencedirect.com/science/article/pii/S109727652101025X
* 2i; CHIR99021 and PD0325901 from Axon Medchem
Wiesinger, A., Li, J., Fokkert, L., Bakker, P., Verkerk, A. O., Christoffels, V. M., ... & Devalla, H. D. (2022). A single cell transcriptional roadmap of human pacemaker cell differentiation. Elife, 11, e76781.
https://elifesciences.org/articles/76781
Ciminieri, C., Wu, X., Bosa, I. S. T., Woesta, M. E., D’Ambrosia, A., Wardenaard, R., ... & Gosens, R. (2022). Diesel exhaust particles distort lung epithelial progenitors and their fibroblast niche. Targeting the COPD lung microenvironment for lung repair: mechanisms and novel therapeutic opportunities, 305, 159.
https://research.rug.nl/files/560224354/Complete_thesis.pdf#page=160
Coll, M., Ariño, S., Martínez‐Sánchez, C., Garcia‐Pras, E., Gallego, J., Moles, A., ... & Sancho‐Bru, P. (2022). Ductular reaction promotes intrahepatic angiogenesis through Slit2–Roundabout 1 signaling. Hepatology, 75(2), 353-368.
https://aasldpubs.onlinelibrary.wiley.com/doi/abs/10.1002/hep.32140
* CHIR99021, Forkolin and Y27632 from Axon Medchem
Ramadan, R., Wouters, V. M., van Neerven, S. M., de Groot, N. E., Garcia, T. M., Muncan, V., ... & Huels, D. J. (2022). The extracellular matrix controls stem cell specification and crypt morphology in the developing and adult mouse gut. Biology Open, 11(12), bio059544.
https://journals.biologists.com/bio/article-abstract/11/12/bio059544/284355
Rawat, H. (2022). Pleiotropic role of the myocytic cell cycle in congenital heart disease (Doctoral dissertation, Technische Universität München).
https://mediatum.ub.tum.de/1656803
Butti, E., Cattaneo, S., Bacigaluppi, M., Cambiaghi, M., Scotti, G. M., Brambilla, E., ... & Martino, G. (2022). Neural precursor cells tune striatal connectivity through the release of IGFBPL1. Nature Communications, 13(1), 7579.
https://www.nature.com/articles/s41467-022-35341-y
Ferdaos, N., Lowell, S., & Mason, J. O. (2022). Pax6 mutant cerebral organoids partially recapitulate phenotypes of Pax6 mutant mouse strains. Plos one, 17(11), e0278147.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0278147
* 2i; CHIR99021 and PD0325901 from Axon Medchem
Song, L., Bekdash, R., Morikawa, K., Quejada, J. R., Klein, A. D., Aina-Badejo, D., ... & Yazawa, M. (2022). Sigma non-opioid receptor 1 is a potential therapeutic target for long QT syndrome. Nature cardiovascular research, 1(2), 142-156.
https://www.nature.com/articles/s44161-021-00016-2
Zierold1Ε, R., & Blick, R. H. (2022). Robust neuronal differentiation of human iPSC‑derived neural progenitor cells cultured on densely‑spaced spiky silicon nanowire arrays. Electrophysiology of human induced pluripotent stem cell-derived neurons cultivated on micro-and nanostructured substrates, 11(1), 112.
https://d-nb.info/1272406814/34#page=124
Vivas, A., IJspeert, C., Pan, J. Y., Vermeul, K., van den Berg, A., Passier, R., ... & van der Meer, A. D. (2022). Generation and Culture of Cardiac Microtissues in a Microfluidic Chip with a Reversible Open Top Enables Electrical Pacing, Dynamic Drug Dosing and Endothelial Cell Co‐Culture. Advanced Materials Technologies, 7(7), 2101355.
https://onlinelibrary.wiley.com/doi/abs/10.1002/admt.202101355
Lehmann, J. I. (2022). Zelldifferenzierung und Selbsterneuerung in porzinen intestinalen Organoiden(Doctoral dissertation, Dissertation, Hannover, Stiftung Tierärztliche Hochschule Hannover, 2022).
https://elib.tiho-hannover.de/servlets/MCRFileNodeServlet/tiho_derivate_00001876/Lehmannj-ws22.pdf
Schwarz, L., & Fitzgerald, J. C. (2022). Steady-state levels of Miro1 linked to phosphorylation at serine 156 and mitochondrial respiration in dopaminergic neurons. Cells, 11(8), 1269.
https://www.mdpi.com/1580082
* Dorsomorphin and CHIR99021 from Axon Medchem
Fischer, V., Hisler, V., Scheer, E., Lata, E., Morlet, B., Plassard, D., ... & Vincent, S. D. (2022). SUPT3H-less SAGA coactivator can assemble and function without significantly perturbing RNA polymerase II transcription in mammalian cells. Nucleic Acids Research, 50(14), 7972-7990.
https://academic.oup.com/nar/article-abstract/50/14/7972/6649377
* 2i; CHIR99021 and PD0325901 from Axon Medchem
Takakura, H., Horinaka, M., Imai, A., Aono, Y., Nakao, T., Miyamoto, S., ... & Sakai, T. (2022). Sodium salicylate and 5-aminosalicylic acid synergistically inhibit the growth of human colon cancer cells and mouse intestinal polyp-derived cells. Journal of Clinical Biochemistry and Nutrition, 70(2), 93.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8921728/
Sabaté Soler, S. (2022). INCREASING THE COMPLEXITY OF MIDBRAIN ORGANOID SYSTEMS FOR DEVELOPMENTAL STUDIES AND DISEASE MODELLING(Doctoral dissertation, University of Luxembourg, Belvaux, Luxembourg).
https://orbilu.uni.lu/bitstream/10993/50803/1/PhD%20Thesis_Sònia%20Sabaté%20Soler.pdf
Correia, B., Sousa, M. I., Branco, A. F., Rodrigues, A. S., & Ramalho-Santos, J. (2022). Leucine and Arginine Availability Modulate Mouse Embryonic Stem Cell Proliferation and Metabolism. International Journal of Molecular Sciences, 23(22), 14286.
https://www.mdpi.com/1953034
* 2i; CHIR99021 and PD0325901 from Axon Medchem
Mira-Bontenbal, H., Tan, B., Gontan, C., Goossens, S., Boers, R. G., Boers, J. B., ... & Gribnau, J. (2022). Genetic and epigenetic determinants of reactivation of Mecp2 and the inactive X chromosome in neural stem cells. Stem Cell Reports, 17(3), 693-706.
https://www.sciencedirect.com/science/article/pii/S2213671122000522
Schmid, M. (2022). Depicting the role of CDKN2A in pancreatic differentiation exploiting a patient-specific human induced pluripotent stem cell model (Doctoral dissertation, Universität Ulm).
https://oparu.uni-ulm.de/xmlui/handle/123456789/43989
* CHIR99021 and SB432542 from Axon Medchem
Saito, A., Tamura, T., Zahradnik, J., Deguchi, S., Tabata, K., Kimura, I., ... & Sato, K. (2022). Virological characteristics of the SARS-CoV-2 Omicron BA. 2.75. bioRxiv, 2022-08.
https://www.biorxiv.org/content/10.1101/2022.08.07.503115.abstract
Organ-on-a-Chip, A. C. Microfluidic and Microengineered Systems for Automated Cardiac Organ-on-a-Chip Tissue Culture.
https://research.utwente.nl/files/287974408/Thesis_Aisen_Vivas.pdf
Suenaga, R., Konagaya, S., Yamaura, J., Ito, R., Tanaka, S., Ishizaki, Y., & Toyoda, T. (2022). Microwell bag culture for large-scale production of homogeneous islet-like clusters. Scientific reports, 12(1), 5221.
https://www.nature.com/articles/s41598-022-09124-w
Coda, D. M., Patel, H., Gori, I., Gaarenstroom, T. E., Song, O. R., Howell, M., & Hill, C. S. (2022). A network of transcription factors governs the dynamics of NODAL/Activin transcriptional responses. Journal of Cell Science, 135(8), jcs259972.
https://journals.biologists.com/jcs/article-abstract/135/8/jcs259972/275130
Saito, A., Tamura, T., Zahradnik, J., Deguchi, S., Tabata, K., Anraku, Y., ... & Sato, K. (2022). Virological characteristics of the SARS-CoV-2 Omicron BA. 2.75 variant. Cell host & microbe, 30(11), 1540-1555.
https://www.sciencedirect.com/science/article/pii/S1931312822005169
Wehmeyer, A. E., Schüle, K. M., Conrad, A., Schröder, C. M., Probst, S., & Arnold, S. J. (2022). Chimeric 3D gastruloids–a versatile tool for studies of mammalian peri-gastrulation development. Development, 149(22), dev200812.
https://journals.biologists.com/dev/article/149/22/dev200812/283179/Chimeric-3D-gastruloids-a-versatile-tool-for
* 2i; CHIR99021 and PD0325901 from Axon Medchem
Mamberti, S., Pabba, M. K., Rapp, A., Cardoso, M. C., & Scholz, M. (2022). The Chromatin Architectural Protein CTCF Is Critical for Cell Survival upon Irradiation-Induced DNA Damage. International Journal of Molecular Sciences, 23(7), 3896.
https://www.mdpi.com/1422-0067/23/7/3896
* 2i; CHIR99021 and PD0325901 from Axon Medchem
Pilotto, F., Schmitz, A., Maharjan, N., Diab, R., Odriozola, A., Tripathi, P., ... & Saxena, S. (2022). PolyGA targets the ER stress-adaptive response by impairing GRP75 function at the MAM in C9ORF72-ALS/FTD. Acta neuropathologica, 144(5), 939-966.
https://link.springer.com/article/10.1007/s00401-022-02494-5
Di Minin, G., Holzner, M., Grison, A., Dumeau, C. E., Chan, W., Monfort, A., ... & Wutz, A. (2022). TMED2 binding restricts SMO to the ER and Golgi compartments. PLoS Biology, 20(3), e3001596.
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3001596
* 2i; CHIR99021 and PD0325901 from Axon Medchem
Palframan, S. L., Mahmud, M. T., Tan, K. S., Grinter, R., Xin, V., Dunstan, R. A., ... & Kwok, T. (2022). Helicobacter pylori vacuolating cytotoxin A exploits human endosomes for intracellular activation. bioRxiv, 2022-08.
https://www.biorxiv.org/content/10.1101/2022.08.22.504206.abstract
Mukamel, Z., Lifshitz, A., Mittnenzweig, M., Chomsky, E., Schwartzman, O., Ben-Kiki, O., ... & Tanay, A. (2022). DNA methyltransferases 3A and 3B target specific sequences during mouse gastrulation. Nature structural & molecular biology, 1-14.
https://www.nature.com/articles/s41594-022-00885-6
* 2i; CHIR99021 and PD0325901 from Axon Medchem
Arroyo, M., Hastert, F. D., Zhadan, A., Schelter, F., Zimbelmann, S., Rausch, C., ... & Cardoso, M. C. (2022). Isoform-specific and ubiquitination dependent recruitment of Tet1 to replicating heterochromatin modulates methylcytosine oxidation. Nature Communications, 13(1), 5173.
https://www.nature.com/articles/s41467-022-32799-8
* 2i; CHIR99021 and PD0325901 from Axon Medchem
Knudsen, T. E., Hamilton, W., Proks, M., Lykkegaard, M., Nielsen, A. V., Trusina, A., & Brickman, J. M. (2022). A bipartite function of ESRRB can integrate signaling over time to balance self-renewal and differentiation. bioRxiv, 2022-09.
https://www.biorxiv.org/content/10.1101/2022.09.20.508291.abstract
Mach, P., Kos, P. I., Zhan, Y., Cramard, J., Gaudin, S., Tünnermann, J., ... & Giorgetti, L. (2022). Cohesin and CTCF control the dynamics of chromosome folding. Nature Genetics, 1-12.
https://www.nature.com/articles/s41588-022-01232-7
* 2i; CHIR99021 and PD0325901 from Axon Medchem
Mach, P., Kos, P. I., Zhan, Y., Cramard, J., Gaudin, S., Tünnermann, J., ... & Giorgetti, L. (2022). Live-cell imaging and physical modeling reveal control of chromosome folding dynamics by cohesin and CTCF. BioRxiv, 2022-03.
https://www.biorxiv.org/content/10.1101/2022.03.03.482826.abstract
* 2i; CHIR99021 and PD0325901 from Axon Medchem
Hanuscheck, N., Thalman, C., Domingues, M., Schmaul, S., Muthuraman, M., Hetsch, F., ... & Zipp, F. (2022). Interleukin-4 receptor signaling modulates neuronal network activity. Journal of Experimental Medicine, 219(6), e20211887.
https://rupress.org/jem/article-abstract/219/6/e20211887/213227
Sabate‐Soler, S., Nickels, S. L., Saraiva, C., Berger, E., Dubonyte, U., Barmpa, K., ... & Schwamborn, J. C. (2022). Microglia integration into human midbrain organoids leads to increased neuronal maturation and functionality. Glia, 70(7), 1267-1288.
https://onlinelibrary.wiley.com/doi/abs/10.1002/glia.24167
Pazur, K., Giannios, I., Lesche, M., Rodriguez-Aznar, E., & Gavalas, A. (2022). Hoxb1 regulates distinct signaling pathways in neuromesodermal and hindbrain progenitors to promote cell survival and specification. Stem Cells, 40(2), 175-189.
https://academic.oup.com/stmcls/article-abstract/40/2/175/6514433
Yuri, S., Murase, Y., & Isotani, A. Generation of Rat Lungs by Blastocyst Complementation in Fgfr2b-Deficient Mouse. Available at SSRN 4096295.
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4096295
* CHIR99021 and CGP77675 from Axon Medchem
Zhao, M., Ren, K., Xiong, X., Xin, Y., Zou, Y., Maynard, J. C., ... & Ruan, H. B. (2022). Epithelial STAT6 O-GlcNAcylation drives a concerted anti-helminth alarmin response dependent on tuft cell hyperplasia and Gasdermin C. Immunity, 55(4), 623-638.
https://www.sciencedirect.com/science/article/pii/S1074761322001327
Velez, M. V. L., Neikes, H. K., Snabel, R. R., Quint, Y., Qian, C., Martens, A., ... & Vermeulen, M. (2022). ONECUT2 restricts Microfold cell numbers in the small intestine; a multi-omics study. bioRxiv, 2022-09.
https://www.biorxiv.org/content/10.1101/2022.09.01.506202v1.full
Zhang, F., Meier, A. B., Poch, C. M., Tian, Q., Engelhardt, S., Sinnecker, D., ... & Dorn, T. (2022). High-throughput optical action potential recordings in hiPSC-derived cardiomyocytes with a genetically encoded voltage indicator in the AAVS1 locus. Frontiers in Cell and Developmental Biology, 10.
https://mediatum.ub.tum.de/doc/1690899/document.pdf
Fagerlund, I., Dougalis, A., Shakirzyanova, A., Gómez-Budia, M., Pelkonen, A., Konttinen, H., ... & Malm, T. (2022). Microglia-like Cells Promote Neuronal Functions in Cerebral Organoids. Cells, 11(1), 124.
https://www.mdpi.com/1430004
* CHIR99021 from Axon Medchem
Sheban, D., Shani, T., Maor, R., Aguilera-Castrejon, A., Mor, N., Oldak, B., ... & Merbl, Y. (2022). SUMOylation of linker histone H1 drives chromatin condensation and restriction of embryonic cell fate identity. Molecular cell, 82(1), 106-122.
https://www.sciencedirect.com/science/article/pii/S1097276521009904?dgcid=author
*3i: CHIR99021, PD 0325901 and Y 27632 from Axon Medchem
Meier, A. B., Murthi, S. R., Rawat, H., Toepfer, C. N., Santamaria, G., Schmid, M., ... & Wolf, C. M. (2022). Cell cycle defects underlie childhood-onset cardiomyopathy associated with Noonan syndrome. Iscience, 25(1), 103596.
https://www.sciencedirect.com/science/article/pii/S2589004221015662
* CHIR99021 from Axon Medchem
Kaemena, D. F., Yoshihara, M., Ashmore, J., Beniazza, M., Zhao, S., Bertenstam, M., ... & Kaji, K. (2022). B1 SINE-binding ZFP266 impedes reprogramming through suppression of chromatin opening by pioneering factors. bioRxiv.
https://www.biorxiv.org/content/10.1101/2022.01.04.474927v1.full
* 2i: CHIR99021 and PD 0325901 from Axon Medchem
Pazur, K., Giannios, I., Lesche, M., Rodriguez-Aznar, E., & Gavalas, A. (2022). Hoxb1 regulates distinct signaling pathways in neuromesodermal and hindbrain progenitors to promote cell survival and specification. Stem Cells.
https://academic.oup.com/stmcls/advance-article-abstract/doi/10.1093/stmcls/sxab014/6514433
Zagare, A., Barmpa, K., Smajic, S., Smits, L. M., Grzyb, K., Grünewald, A., ... & Schwamborn, J. C. (2022). Midbrain organoids mimic early embryonic neurodevelopment and recapitulate LRRK2-p. Gly2019Ser-associated gene expression. The American Journal of Human Genetics.
https://www.sciencedirect.com/science/article/pii/S000292972100464X
Sáez, M., Blassberg, R., Camacho-Aguilar, E., Siggia, E. D., Rand, D. A., & Briscoe, J. (2022). Statistically derived geometrical landscapes capture principles of decision-making dynamics during cell fate transitions. Cell Systems, 13(1), 12-28.
https://www.sciencedirect.com/science/article/pii/S2405471221003367
* 2i: CHIR99021 and PD 0325901 from Axon Medchem
Franck, S., Couvreu De Deckersberg, E., Bubenik, J. L., Markouli, C., Barbé, L., Allemeersch, J., ... & Karen, D. (2022). Myotonic dystrophy type 1 embryonic stem cells show decreased myogenic potential, increased CpG methylation at the DMPK locus and RNA mis-splicing. Biology open, 11(1), bio058978.
https://journals.biologists.com/bio/article/11/1/bio058978/273965/Myotonic-dystrophy-type-1-embryonic-stem-cells
Klemke, L., Blume, J. P., De Oliveira, T., & Schulz-Heddergott, R. (2022). Preparation and Cultivation of Colonic and Small Intestinal Murine Organoids Including Analysis of Gene Expression and Organoid Viability. Bio-protocol, 12(2), e4298-e4298.
https://bio-protocol.org/e4298
Yuri, S., Murase, Y., & Isotani, A. (2022). Generation of rat lungs by blastocyst complementation in Fgfr2b-deficient mouse model. bioRxiv.
https://www.biorxiv.org/content/10.1101/2022.01.05.475149v1.full
Duelen, R., Costamagna, D., Gilbert, G., De Waele, L., Goemans, N., Desloovere, K., ... & Sampaolesi, M. (2022). Human iPSC model reveals a central role for NOX4 and oxidative stress in Duchenne cardiomyopathy. Stem Cell Reports.
https://www.sciencedirect.com/science/article/pii/S2213671121006585
Ribeiro, M. C., Rivera-Arbeláez, J. M., Cofiño-Fabres, C., Schwach, V., Slaats, R. H., Den, S. A. T., ... & Passier, R. (2022). A New Versatile Platform for Assessment of Improved Cardiac Performance in Human-Engineered Heart Tissues. Journal of Personalized Medicine, 12(2), 214.
https://www.mdpi.com/2075-4426/12/2/214
2021 (117 citations)
Gjaltema, R. A., Schwämmle, T., Kautz, P., Robson, M., Schöpflin, R., Lustig, L. R., ... & Schulz, E. G. (2021). Distal and proximal cis-regulatory elements sense X chromosome dosage and developmental state at the Xist locus. Molecular Cell.
https://www.sciencedirect.com/science/article/pii/S109727652101025X
* 2i; CHIR99021 and PD0325901 from Axon Medchem
Mishra, S., Taelman, J., Popovic, M., Tilleman, L., Duthoo, E., Jeught, M., ... & Heindryckx, B. (2021). Activin A-derived human embryonic stem cells show increased competence to differentiate into primordial germ cell-like cells. Stem Cells, 39(5), 551-563.
https://academic.oup.com/stmcls/article-abstract/39/5/551/6423762
Nemoto, A., Kobayashi, R., Yoshimatsu, S., Sato, Y., Kondo, T., Yoo, A. S., ... & Okano, H. (2021). Direct neuronal reprogramming of common marmoset fibroblasts by ASCL1, microRNA-9/9*, and microRNA-124 overexpression. Cells, 10(1), 6.
https://www.mdpi.com/932898
Festuccia, N., Owens, N., Chervova, A., Dubois, A., & Navarro, P. (2021). The combined action of Esrrb and Nr5a2 is essential for murine naïve pluripotency. Development, 148(17), dev199604.
https://journals.biologists.com/dev/article-abstract/148/17/dev199604/272136
2i: CHIR99021 and PD0325901 from Axon Medchem
Di Stefano, B., & Hochedlinger, K. Reduced MEK inhibition preserves genomic stability in naïve human ES cells. Protocol Exchange, doi, 10. posted 2018, online 2021
httpikeos://assets.researchsquare.com/files/nprot-6829/v1/eb3f5184-8291-4206-8e0d-6ed902bce15f.pdf
* CHIR99021, PD 0325901, IM-12, Y 27632, Go 6983, SB 590885, WH-4-023 from Axon Medchem
Ikeo, S., Yamamoto, Y., Ikeda, K., Sone, N., Korogi, Y., Tomiyama, L., ... & Gotoh, S. (2021). Core-shell hydrogel microfiber-expanded pluripotent stem cell-derived lung progenitors applicable to lung reconstruction in vivo. Biomaterials, 276, 121031.
https://www.sciencedirect.com/science/article/pii/S0142961221003872
https://www.mdpi.com/2073-4409/10/4/876/htm
* 2i: CHIR99021 + PD 0325901 from Axon Medchem
Martinez-Val, A., Lynch, C. J., Calvo, I., Ximénez-Embún, P., Garcia, F., Zarzuela, E., ... & Munoz, J. (2021). Dissection of two routes to naïve pluripotency using different kinase inhibitors. Nature Communications, 12(1), 1-16.
https://www.nature.com/articles/s41467-021-22181-5
* 2i: CHIR99021 and PD 0325901 from Axon Medchem
Fischer, V., Plassard, D., Ye, T., San Martin, B. R., Stierle, M., Tora, L., & Devys, D. Two Related Coactivator Complexes SAGA and ATAC Control Embryonic Stem Cell Self-Renewal Through Two Different Acetyltransferase-Independent Mechanisms. Available at SSRN 3782006.
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3782006
* 2i: CHIR99021 + PD 0325901 from Axon Medchem
Genolet, O., Monaco, A. A., Dunkel, I., Boettcher, M., & Schulz, E. G. (2021). Identification of X-chromosomal genes that drive sex differences in embryonic stem cells through a hierarchical CRISPR screening approach. Genome Biology, 22(1), 1-41.
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02321-2
* 2i: CHIR99021 + PD 0325901 from Axon Medchem
https://stemcellsjournals.onlinelibrary.wiley.com/doi/full/10.1002/stem.3302
Müller, J. A., Groß, R., Conzelmann, C., Krüger, J., Merle, U., Steinhart, J., ... & Kleger, A. (2021). SARS-CoV-2 infects and replicates in cells of the human endocrine and exocrine pancreas. Nature Metabolism, 1-17.
https://www.nature.com/articles/s42255-021-00347-1?elqTrackId=e0563488ddb44e0e89d32dfd961b20c6
Nemoto, A., Kobayashi, R., Yoshimatsu, S., Sato, Y., Kondo, T., Yoo, A. S., ... & Okano, H. (2021). Direct Neuronal Reprogramming of Common Marmoset Fibroblasts by ASCL1, microRNA-9/9*, and microRNA-124 Overexpression. Cells, 10(1), 6.
https://www.mdpi.com/2073-4409/10/1/6
Spijkers, X. M., Pasteuning-Vuhman, S., Dorleijn, J. C., Vulto, P., Wevers, N. R., & Pasterkamp, R. J. (2021). A directional 3D neurite outgrowth model for studying motor axon biology and disease. Scientific reports, 11(1), 1-15.
https://www.nature.com/articles/s41598-021-81335-z?elqTrackId=89cdfe62350e4404b93097e862af6ee2
Bartoschek, M. D., Ugur, E., Nguyen, T. A., Rodschinka, G., Wierer, M., Lang, K., & Bultmann, S. (2021). Identification of permissive amber suppression sites for efficient non-canonical amino acid incorporation in mammalian cells. Nucleic Acids Research.
https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkab132/6158120?login=true
* 2i: CHIR99021 and PD 0325901 from Axon Medchem
Qin, W., Stengl, A., Ugur, E., Leidescher, S., Ryan, J., Cardoso, M. C., & Leonhardt, H. (2021). HP1β carries an acidic linker domain and requires H3K9me3 for phase separation. Nucleus, 12(1), 44-57.
https://www.tandfonline.com/doi/full/10.1080/19491034.2021.1889858
* 2i: CHIR99021 and PD 0325901 from Axon Medchem
Manstein, F., Ullmann, K., Kropp, C., Halloin, C., Triebert, W., Franke, A., ... & Zweigerdt, R. (2021). High density bioprocessing of human pluripotent stem cells by metabolic control and in silico modeling. Stem cells translational medicine.
https://stemcellsjournals.onlinelibrary.wiley.com/doi/full/10.1002/sctm.20-0453
* CHIR99021 and SB 431542 from Axon Medchem
Mishra, S., Taelman, J., Popovic, M., Tilleman, L., Duthoo, E., Van der Jeught, M., ... & Heindryckx, B. (2021). Activin A‐derived human embryonic stem cells show increased competence to differentiate into primordial germ cell‐like cells. Stem Cells.
https://stemcellsjournals.onlinelibrary.wiley.com/doi/abs/10.1002/stem.3335
Yoshimatsu, M., Ohnishi, H., Zhao, C., Hayashi, Y., Kuwata, F., Okuyama, H., ... & Omori, K. (2021). In vivo regeneration of rat laryngeal cartilage with mesenchymal stem cells derived from human induced pluripotent stem cells via neural crest cells. Stem cell research, 102233.
https://www.sciencedirect.com/science/article/pii/S1873506121000799
Lee, M. H., Thomas, J. L., Su, Z. L., Yeh, W. K., Monzel, A. S., Bolognin, S., ... & Lin, H. Y. (2021). Epitope imprinting of alpha-synuclein for sensing in Parkinson's brain organoid culture medium. Biosensors and Bioelectronics, 175, 112852.
https://www.sciencedirect.com/science/article/abs/pii/S0956566320308381
Mus, L. M., Van Haver, S., Popovic, M., Trypsteen, W., Lefever, S., Zeltner, N., ... & Speleman, F. (2021). Recurrent chromosomal imbalances provide selective advantage to human embryonic stem cells under enhanced replicative stress conditions. Genes, Chromosomes and Cancer, 60(4), 272-281.
https://onlinelibrary.wiley.com/doi/abs/10.1002/gcc.22931
Zanetti, C., Spitz, S., Berger, E., Bolognin, S., Smits, L., Crepaz, P., ... & Ertl, P. (2021). Monitoring the neurotransmitter release of human midbrain organoids using a redox cycling microsensor as a novel tool for personalized Parkinson’s disease modeling and drug screening. Analyst.
https://pubs.rsc.org/en/content/articlehtml/2021/an/d0an02206c
Chang, W. F., Peng, M., Hsu, J., Xu, J., Cho, H. C., Hsieh-Li, H. M., ... & Sung, L. Y. (2021). Effects of Survival Motor Neuron Protein on Germ Cell Development in Mouse and Human. International Journal of Molecular Sciences, 22(2), 661.
https://www.mdpi.com/1422-0067/22/2/661
* 2i: CHIR99021 and PD 0325901 from Axon Medchem
Jansch, C., Ziegler, G. C., Forero, A., Gredy, S., Wäldchen, S., Vitale, M. R., ... & Lesch, K. P. (2021). Serotonin-specific neurons differentiated from human iPSCs form distinct subtypes with synaptic protein assembly. Journal of Neural Transmission, 1-17.
https://link.springer.com/article/10.1007/s00702-021-02303-5
Watanabe, M., Yamada, Y., Kurumida, Y., Kameda, T., Sukeno, M., Iizuka-Ohashi, M., ... & Mutoh, M. (2021). Rabdosianone I, a Bitter Diterpene from an Oriental Herb, Suppresses Thymidylate Synthase Expression by Directly Binding to ANT2 and PHB2. Cancers, 13(5), 982.
https://www.mdpi.com/2072-6694/13/5/982/htm
Wang, F., El-Saafin, F., Ye, T., Stierle, M., Negroni, L., Durik, M., ... & Tora, L. (2021). Histone H2Bub1 deubiquitylation is essential for mouse development, but does not regulate global RNA polymerase II transcription. bioRxiv.
https://www.biorxiv.org/content/10.1101/2021.02.23.432458v1.abstract
* 2i: CHIR99021 and PD 0325901 from Axon Medchem
Fischer, V., Plassard, D., Ye, T., San Martin, B. R., Stierle, M., Tora, L., & Devys, D. Two Related Coactivator Complexes SAGA and ATAC Control Embryonic Stem Cell Self-Renewal Through Two Different Acetyltransferase-Independent Mechanisms. Available at SSRN 3782006.
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3782006
* 2i: CHIR99021 and PD 0325901 from Axon Medchem
Mira-Bontenbal, H., Tan, B., Gontan, C., Goossens, S., Boers, R. G., Boers, J. B., ... & Gribnau, J. M. (2021). Genetic and epigenetic determinants of reactivation of Mecp2 and the inactive X chromosome in neural stem cells. bioRxiv.
https://www.biorxiv.org/content/10.1101/2021.02.25.432827v1.full
Klein, T. (2021). Establishing an in vitro disease model for Fabry Disease using patient specific induced pluripotent stem cell-derived sensory neurons (Doctoral dissertation, Universität Würzburg).
https://opus.bibliothek.uni-wuerzburg.de/opus4-wuerzburg/frontdoor/deliver/index/docId/19970/file/Klein_Thomas_iPSC_Dissertation.pdf
Mitsunaga, S., Shioda, K., Hanna, J. H., Isselbacher, K. J., & Shioda, T. (2021). Production and Analysis of Human Primordial Germ Cell–Like Cells. In Testicular Germ Cell Tumors (pp. 125-145). Humana, New York, NY.
https://link.springer.com/protocol/10.1007/978-1-0716-0860-9_10
Kanagaki, S., Suezawa, T., Moriguchi, K., Nakao, K., Toyomoto, M., Yamamoto, Y., ... & Gotoh, S. (2021). Hydroxypropyl cyclodextrin improves amiodarone-induced aberrant lipid homeostasis of alveolar cells. American Journal of Respiratory Cell and Molecular Biology, (ja).
https://onlinelibrary.wiley.com/doi/abs/10.1111/gtc.12736
2020 (105 citations)
Vered, I. (2020). Analysis of translesion DNA synthesis in embryonic stem cells (Doctoral dissertation, The Weizmann Institute of Science).
Analysis of translesion DNA synthesis in embryonic stem cells
* 2i: CHIR99021 + PD 0325901 from Axon Medchem
Han, B. Y., Seah, M. K., Brooks, I. R., Quek, D. H., Huxley, D. R., Foo, C. S., ... & Guccione, E. (2020). Global translation during early development depends on the essential transcription factor PRDM10. Nature communications, 11(1), 1-14.
Global translation during early development depends on the essential transcription factor PRDM10
* 2i: CHIR99021 + PD 0325901 from Axon Medchem
Ma, H., Hayama, T., Van Dyken, C., Darby, H., Koski, A., Lee, Y., ... & Mitalipov, S. (2020). Deleterious mtDNA mutations are common in mature oocytes. Biology of reproduction, 102(3), 607-619.
https://academic.oup.com/biolreprod/article/102/3/607/5588758?login=true
* 2i: CHIR99021 + PD 0325901 from Axon
Posfai, E., Schell, J. P., Janiszewski, A., Rovic, I., Murray, A., Bradshaw, B., ... & Rossant, J. (2020). Defining totipotency using criteria of increasing stringency. BioRxiv.
https://www.biorxiv.org/content/10.1101/2020.03.02.972893v1.full
* 2i: CHIR99021 + PD 0325901 from Axon
Pacini, G., Dunkel, I., Mages, N., Mutzel, V., Timmermann, B., Marsico, A., & Schulz, E. G. (2020). Integrated analysis of Xist upregulation and gene silencing at the onset of random X-chromosome inactivation at high temporal and allelic resolution. bioRxiv.
https://www.biorxiv.org/content/10.1101/2020.07.20.211573v1.full
* 2i: CHIR99021 + PD 0325901 from Axon Medchem
https://www.nature.com/articles/s41556-020-0573-1.
Kong, J. H., Young, C. B., Pusapati, G. V., Patel, C. B., Ho, S., Krishnan, A., ... & Rohatgi, R. (2020). A membrane-tethered ubiquitination pathway regulates Hedgehog signaling and heart development. Developmental Cell, 55(4), 432-449.
Sato, T., Ishikawa, S., Asano, J., Yamamoto, H., Fujii, M., Sato, T., ... & Ohteki, T. (2020). Regulated IFN signalling preserves the stemness of intestinal stem cells by restricting differentiation into secretory-cell lineages. Nature Cell Biology, 22(8), 919-926.
Neagu, A., van Genderen, E., Escudero, I., Verwegen, L., Kurek, D., Lehmann, J., ... & Ten Berge, D. (2020). In vitro capture and characterization of embryonic rosette-stage pluripotency between naive and primed states. Nature cell biology, 22(5), 534-545.
https://www.nature.com/articles/s41556-020-0508-x
Ma, B., Trieu, T. J., Habib, S. J., & Chen, X. (2020). Protocol for Establishing Mouse Embryonic Stem Cells to Study Histone Inheritance Pattern at Single-Cell Resolution. STAR protocols, 1(3), 100178.
* 2i: CHIR99021 and PD 0325901 from Axon Medchem
Castel, G., Meistermann, D., Bretin, B., Firmin, J., Blin, J., Loubersac, S., ... & David, L. (2020). Induction of Human Trophoblast Stem Cells from Somatic Cells and Pluripotent Stem Cells. Cell Reports, 33(8), 108419.
https://www.sciencedirect.com/science/article/pii/S221112472031408X
* 8 inhibitors are from Axon Medchem, including CHIR99021, PD 0325901, Y 27632, IWR-1, A83-01, SB4 31542, Go 6983, Forskolin.
Dries, R., Stryjewska, A., Coddens, K., Okawa, S., Notelaers, T., Birkhoff, J., ... & Huylebroeck, D. (2020). Integrative and perturbation‐based analysis of the transcriptional dynamics of TGFβ/BMP system components in transition from embryonic stem cells to neural progenitors. Stem Cells, 38(2), 202-217.
https://stemcellsjournals.onlinelibrary.wiley.com/doi/abs/10.1002/stem.3111
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Kuo, Y. C., Hsu, C. C., & Rajesh, R. (2020). iPSCs-laden GDF8-grafted aldehyde hyaluronic acid-polyacrylamide inverted colloidal crystal constructs with controlled release of CHIR99021 and retinoic acid to generate insulin-producing cells. Journal of the Taiwan Institute of Chemical Engineers, 116, 223-237.
https://www.sciencedirect.com/science/article/pii/S1876107020303412
Shiozawa, S., Nakajima, M., Okahara, J., Kuortaki, Y., Kisa, F., Yoshimatsu, S., ... & Okano, H. (2020). Primed to naïve-like conversion of the common marmoset embryonic stem cells. Stem cells and development, 29(12), 761-773.
https://www.liebertpub.com/doi/abs/10.1089/scd.2019.0259
Sangokoya, C., & Blelloch, R. (2020). MicroRNA-dependent inhibition of PFN2 orchestrates ERK activation and pluripotent state transitions by regulating endocytosis. Proceedings of the National Academy of Sciences, 117(34), 20625-20635.
https://www.pnas.org/content/117/34/20625.full
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Stathakos, P., Jiménez-Moreno, N., Crompton, L. A., Nistor, P. A., Badger, J. L., Barbuti, P. A., ... & Lane, J. D. (2020). A monolayer hiPSC culture system for autophagy/mitophagy studies in human dopaminergic neurons. Autophagy, 1-17.
https://www.tandfonline.com/doi/full/10.1080/15548627.2020.1739441
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Postlmayr, A., Dumeau, C. E., & Wutz, A. (2020). Cdk8 is required for establishment of H3K27me3 and gene repression by Xist and mouse development. Development, 147(11).
https://dev.biologists.org/content/147/11/dev175141.full
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Lee, M. H., Thomas, J. L., Su, Z. L., Yeh, W. K., Monzel, A. S., Bolognin, S., ... & Lin, H. Y. (2020). Epitope imprinting of alpha-synuclein for sensing in Parkinson's brain organoid culture medium. Biosensors and Bioelectronics, 112852.
https://www.sciencedirect.com/science/article/abs/pii/S0956566320308381
Qiu, Q., Hu, P., Qiu, X., Govek, K. W., Cámara, P. G., & Wu, H. (2020). Massively parallel and time-resolved RNA sequencing in single cells with scNT-seq. Nature methods, 17(10), 991-1001.
https://www.nature.com/articles/s41592-020-0935-4
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Schruf, E., Schroeder, V., Le, H. Q., Schönberger, T., Raedel, D., Stewart, E. L., ... & Garnett, J. P. (2020). Recapitulating idiopathic pulmonary fibrosis related alveolar epithelial dysfunction in a human iPSC‐derived air‐liquid interface model. The FASEB Journal, 34(6), 7825-7846.
https://faseb.onlinelibrary.wiley.com/doi/abs/10.1096/fj.201902926R
Castel, G., Meistermann, D., Bretin, B., Firmin, J., Justine, B. L. I. N., Loubersac, S., ... & David, L. (2020). Generation of human induced trophoblast stem cells. bioRxiv.
https://www.biorxiv.org/content/10.1101/2020.09.15.298257v1.full
* 5i: CHIR99021, PD0325901, Y27632, PD173074 from Axon Medchem
Yoshimatsu, M., Ohnishi, H., Zhao, C., Hayashi, Y., Kuwata, F., Kaba, S., ... & Omori, K. In Vivo Regeneration of Rat Laryngeal Cartilage with Mesenchymal Stem Cells Derived from Human Induced Pluripotent Stem Cells Via Neural Crest Cells. Available at SSRN 3733569.
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3733569
Luo, X., van der Veer, B. K., Sun, L., Bartoccetti, M., Boretto, M., Vankelecom, H., ... & Koh, K. P. (2020). Coordination of germ layer lineage choice by TET1 during primed pluripotency. Genes & development, 34(7-8), 598-618.
http://genesdev.cshlp.org/content/34/7-8/598.full
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Giacomelli, E., Meraviglia, V., Campostrini, G., Cochrane, A., Cao, X., van Helden, R. W., ... & Mummery, C. L. (2020). Human-iPSC-derived cardiac stromal cells enhance maturation in 3D cardiac microtissues and reveal non-cardiomyocyte contributions to heart disease. Cell Stem Cell, 26(6), 862-879.
https://www.sciencedirect.com/science/article/pii/S1934590920302022
Yamanaka, Y., Uemura, M., & Alev, C. (2020). Stepwise in vitro induction of human somitic mesoderm and its derivatives.
https://www.researchsquare.com/article/pex-827/v1.pdf
Harberts, J., Kusch, M., O’Sullivan, J., Zierold, R., & Blick, R. H. (2020). A Temperature-Controlled Patch Clamp Platform Demonstrated on Jurkat T Lymphocytes and Human Induced Pluripotent Stem Cell-Derived Neurons. Bioengineering, 7(2), 46.
https://www.mdpi.com/2306-5354/7/2/46
Hagiwara, R., Oki, Y., Matsumaru, T., Ibayashi, S., & Kano, K. (2020). Generation of metabolically functional hepatocyte‐like cells from dedifferentiated fat cells by Foxa2, Hnf4a and Sall1 transduction. Genes to Cells, 25(12), 811-824.
https://onlinelibrary.wiley.com/doi/abs/10.1111/gtc.12814
Ribeiro, M. C., Slaats, R. H., Schwach, V., Rivera-Arbelaez, J. M., Tertoolen, L. G., Van Meer, B. J., ... & Passier, R. (2020). A cardiomyocyte show of force: A fluorescent alpha-actinin reporter line sheds light on human cardiomyocyte contractility versus substrate stiffness. Journal of molecular and cellular cardiology, 141, 54-64.
https://www.sciencedirect.com/science/article/pii/S0022282820300699
Yamamoto, Y., Korogi, Y., Hirai, T., & Gotoh, S. (2020). A method of generating alveolar organoids using human pluripotent stem cells. In Methods in Cell Biology (Vol. 159, pp. 115-141). Academic Press.
https://www.sciencedirect.com/science/article/pii/S0091679X20300108
Bayerl, J., Ayyash, M., Shani, T., Manor, Y., Gafni, O., Kalma, Y., ... & Hanna, J. H. (2020). Tripartite Inhibition of SRC-WNT-PKC Signalling Consolidates Human Naïve Pluripotency. bioRxiv.
https://www.biorxiv.org/content/10.1101/2020.05.23.112433v1.full
* CHIR99021, PD 0325901, IWR-1, XAV 939, BIRB0796, Go6983, Y27632, CGP77675, LDN193189, A83-01, DBZ, SB590885, BIX02189, RU-SKI43, BIX-02194
Bollmanna, E., Schreibera, J. A., Rittera, N., Peischarda, S., Hoa, H. T., Wünschb, B., ... & Seebohma, G. (2020). Stilbenedisulfonic Acid (DIDS) Modulates the Activity of KCNQ1/KCNE1 Channels by an Interaction with the Central Pore Region. Cell Physiol Biochem, 54, 321-332.
https://www.researchgate.net/profile/Julian_Schreiber/publication/340512366_44'-Diisothiocyanato-22'-Stilbenedisulfonic_Acid_DIDS_Modulates_the_Activity_of_KCNQ1KCNE1_Channels_by_an_Interaction_with_the_Central_Pore_Region/links/5ea126da458515ec3aff263c/4-4-Diisothiocyanato-2-2-Stilbenedisulfonic-Acid-DIDS-Modulates-the-Activity-of-KCNQ1-KCNE1-Channels-by-an-Interaction-with-the-Central-Pore-Region.pdf
Kane, K. I., Jarazo, J., Moreno, E. L., Fleming, R. M., & Schwamborn, J. C. (2020). Passive controlled flow for Parkinson's disease neuronal cell culture in 3D microfluidic devices. Organs-on-a-Chip, 2, 100005.
https://www.sciencedirect.com/science/article/pii/S2666102020300057
Salzberg, Y., Pechuk, V., Gat, A., Setty, H., Sela, S., & Oren-Suissa, M. (2020). Synaptic protein degradation controls sexually dimorphic circuits through regulation of DCC/UNC-40. Current Biology, 30(21), 4128-4141.
https://www.sciencedirect.com/science/article/pii/S0960982220311568
Bustos, F., Segarra-Fas, A., Nardocci, G., Cassidy, A., Antico, O., Davidson, L., ... & Findlay, G. M. (2020). Functional Diversification of SRSF Protein Kinase to Control Ubiquitin-Dependent Neurodevelopmental Signaling. Developmental cell, 55(5), 629-647.
https://www.sciencedirect.com/science/article/pii/S1534580720307577
* CHIR99021, PD0325901 and SPHINX31 from Axon Medchem
Steinberg, D. J., Saleem, A., Repudi, S. R., Banne, E., Mahajnah, M., Hanna, J. H., ... & Aqeilan, R. I. (2020). Modeling Genetic Epileptic Encephalopathies using Brain Organoids. bioRxiv.
https://www.biorxiv.org/content/10.1101/2020.08.23.263236v1.full
* CHIR99021, LDN193189, A83-01 from Axon Medchem
Vila-Cejudo, M., Alonso-Alonso, S., Pujol, A., Santaló, J., & Ibáñez, E. (2020). Wnt pathway modulation generates blastomere-derived mouse embryonic stem cells with different pluripotency features. Journal of Assisted Reproduction and Genetics, 37(12), 2967-2979.
https://link.springer.com/article/10.1007/s10815-020-01964-7
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Alendar, A., Lambooij, J. P., Bhaskaran, R., Lancini, C., Song, J. Y., van Vugt, H., ... & Berns, A. (2020). Gene expression regulation by the Chromodomain helicase DNA-binding protein 9 (CHD9) chromatin remodeler is dispensable for murine development. PloS one, 15(5), e0233394.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0233394
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Weinberger, L. (2020). Characterization of human naive pluripotent stem cells and their differentiation to Primordial Germ Cells (Doctoral dissertation, The Weizmann Institute of Science).
https://weizmann.esploro.exlibrisgroup.com/view/delivery/972WIS_INST/1274955990003596/1374919490003596
* CHIR99021, PD0325901, SB202190, BIRB796, Y27632, CGP77675 from Axon Medchem
Ma, B., Trieu, T. J., Cheng, J., Zhou, S., Tang, Q., Xie, J., ... & Chen, X. (2020). Differential histone distribution patterns in induced asymmetrically dividing mouse embryonic stem cells. Cell Reports, 32(6), 108003.
https://www.sciencedirect.com/science/article/pii/S2211124720309888
*2i: CHIR99021 and PD0325901 from Axon Medchem
Klima, S., Suciu, I., Hoelting, L., Gutbier, S., Waldmann, T., Dietrich, D. R., & Leist, M. (2020). Examination of microcystin neurotoxicity using central and peripheral human neurons. Alternatives to Animal Experimentation: ALTEX.
http://kops.uni-konstanz.de/handle/123456789/50031
Schenke, M., Schjeide, B. M., Püschel, G. P., & Seeger, B. (2020). Analysis of Motor Neurons Differentiated from Human Induced Pluripotent Stem Cells for the Use in Cell-Based Botulinum Neurotoxin Activity Assays. Toxins, 12(5), 276.
https://www.mdpi.com/2072-6651/12/5/276/htm
Nesterenko, Y., Dolde, X., Leist, M., & Mayans, O. (2020). Strategy to replace animal-derived ECM by a modular and highly defined matrix. Alternatives to Animal Experimentation: ALTEX, 37(3).
http://kops.uni-konstanz.de/handle/123456789/49891
Heß, K., Starost, L., Kieran, N. W., Thomas, C., Vincenten, M. C., Antel, J., ... & Kuhlmann, T. (2020). Lesion stage-dependent causes for impaired remyelination in MS. Acta neuropathologica, 140(3), 359-375.
https://link.springer.com/article/10.1007/s00401-020-02189-9
Kamiya, D., Takenaka-Ninagawa, N., Motoike, S., Kajiya, M., Akaboshi, T., Zhao, C., ... & Ikeya, M. Induction of Functional Mesenchymal Stem/Stromal Cells from Human iPCs Via a Neural Crest Cell Lineage Under Xeno-Free Conditions. Stromal Cells from Human iPCs Via a Neural Crest Cell Lineage Under Xeno-Free Conditions.
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3741231
Minamide, K., Sato, T., Nakanishi, Y., Ohno, H., Kato, T., Asano, J., & Ohteki, T. (2020). IRF2 maintains the stemness of colonic stem cells by limiting physiological stress from interferon. Scientific reports, 10(1), 1-12.
https://www.nature.com/articles/s41598-020-71633-3?elqTrackId=5f68eaf2a3044295b9a1caad4716bf51
Lasman, L., Krupalnik, V., Viukov, S., Mor, N., Aguilera-Castrejon, A., Schneir, D., ... & Hanna, J. H. (2020). Context-dependent functional compensation between Ythdf m6A reader proteins. Genes & development, 34(19-20), 1373-1391.
https://www.biorxiv.org/content/biorxiv/early/2020/06/03/2020.06.03.131441.full.pdf
* 2i from Axon Medchem
Kano, M., Takanashi, M., Oyama, G., Yoritaka, A., Hatano, T., Shiba-Fukushima, K., ... & Hattori, N. (2020). Reduced astrocytic reactivity in human brains and midbrain organoids with PRKN mutations. npj Parkinson's Disease, 6(1), 1-9.
https://www.nature.com/articles/s41531-020-00137-8
Starost, L., Lindner, M., Herold, M., Xu, Y. K. T., Drexler, H. C., Heß, K., ... & Kuhlmann, T. (2020). Extrinsic immune cell-derived, but not intrinsic oligodendroglial factors contribute to oligodendroglial differentiation block in multiple sclerosis. Acta neuropathologica, 140(5), 715-736.
https://link.springer.com/article/10.1007/s00401-020-02217-8
Gafni, O. (2020). Delineating routes and applications of naive pluripotency (Doctoral dissertation, The Weizmann Institute of Science).
https://weizmann.esploro.exlibrisgroup.com/view/delivery/972WIS_INST/1275016610003596/1375015210003596
* CHIR99021, PD0325901, SB201920, Y27632, BIRB796 from Axon Medchem
Mulholland, C. B., Traube, F. R., Ugur, E., Parsa, E., Eckl, E. M., Schönung, M., ... & Bultmann, S. (2020). Distinct and stage-specific contributions of TET1 and TET2 to stepwise cytosine oxidation in the transition from naive to primed pluripotency. Scientific reports, 10(1), 1-12.
https://www.nature.com/articles/s41598-020-68600-3?elqTrackId=f22b504ca3bf400ca13ed38bda449fd7
* 2i from Axon Medchem
Liu, Y., Bai, H., Guo, F., Thai, P. N., Luo, X., Zhang, P., ... & Lu, X. (2020). PGC-1α activator ZLN005 promotes maturation of cardiomyocytes derived from human embryonic stem cells. Aging (Albany NY), 12(8), 7411.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7202542/
Fischer, V., Plassard, D., Ye, T., San Martin, B. R., Stierle, M., Tora, L., & Devys, D. Two Related Coactivator Complexes SAGA and ATAC Control Embryonic Stem Cell Self-Renewal Through Two Different Acetyltransferase-Independent Mechanisms. Available at SSRN 3782006.
https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3782006
* 2i from Axon Medchem
Geula, S. (2020). Deciphering the molecular role of N6-Methyladenosine mRNA modification in development of mammalian stem cells (Doctoral dissertation, The Weizmann Institute of Science).
https://weizmann.esploro.exlibrisgroup.com/view/delivery/972WIS_INST/1274920170003596/1374919530003596
Nickels, S. L., Modamio, J., Mendes-Pinheiro, B., Monzel, A. S., Betsou, F., & Schwamborn, J. C. (2020). Reproducible generation of human midbrain organoids for in vitro modeling of Parkinson’s disease. Stem Cell Research, 46, 101870.
https://www.sciencedirect.com/science/article/pii/S1873506120301719
Allijn, I., Ribeiro, M., Poot, A., Passier, R., & Stamatialis, D. (2020). Membranes for modelling cardiac tissue stiffness in vitro based on poly (Trimethylene carbonate) and poly (ethylene glycol) polymers. Membranes, 10(10), 274.
https://www.mdpi.com/2077-0375/10/10/274
Ignatova, V. V., Stolz, P., Kaiser, S., Gustafsson, T. H., Lastres, P. R., Sanz-Moreno, A., ... & Schneider, R. (2020). The rRNA m6A methyltransferase METTL5 is involved in pluripotency and developmental programs. Genes & development, 34(9-10), 715-729.
http://genesdev.cshlp.org/content/34/9-10/715.full
* 2i from Axon Medchem
Breuls, N., Giarratana, N., Yedigaryan, L., Carai, P., Heymans, S., Ranga, A., ... & Sampaolesi, M. (2020). Valproic acid stimulates myogenesis in pluripotent stem cell–derived mesodermal progenitors in a Notch-dependent manner. bioRxiv.
https://www.biorxiv.org/content/10.1101/2020.12.16.423053v1.full
Schruf, E. (2020). Recapitulating aspects of alveolar epithelial dysfunction related to idiopathic pulmonary fibrosis utilizing an iPSC-derived air-liquid interface model system (Doctoral dissertation, Universität Ulm).
https://oparu.uni-ulm.de/xmlui/handle/123456789/33478
Shetzer, Y. (2020). Losing the brakes: p53 loss of heterozygosity in malignant transformation of differentiated cells and stem cells (Doctoral dissertation, The Weizmann Institute of Science).
https://weizmann.esploro.exlibrisgroup.com/view/delivery/972WIS_INST/1275000770003596/1375014450003596
Panagiotakopoulou, V., Ivanyuk, D., De Cicco, S., Haq, W., Arsić, A., Yu, C., ... & Deleidi, M. (2020). Interferon-γ signaling synergizes with LRRK2 in neurons and microglia derived from human induced pluripotent stem cells. Nature communications, 11(1), 1-17.
https://www.nature.com/articles/s41467-020-18755-4
van IJzendoorn, D. G., Salvatori, D. C., Cao, X., van den Hil, F., Briaire-de Bruijn, I. H., de Jong, D., ... & Orlova, V. V. (2020). Vascular Tumor Recapitulated in Endothelial Cells from hiPSCs Engineered to Express the SERPINE1-FOSB Translocation. Cell Reports Medicine, 1(9), 100153.
https://www.sciencedirect.com/science/article/pii/S2666379120302007
Spada, F., Schiffers, S., Kirchner, A., Zhang, Y., Arista, G., Kosmatchev, O., ... & Carell, T. (2020). Active turnover of genomic methylcytosine in pluripotent cells. Nature Chemical Biology, 16(12), 1411-1419.
https://www.nature.com/articles/s41589-020-0621-y
* from Axon Medchem (CHIR, CGP, PD, IWR1)
https://weizmann.esploro.exlibrisgroup.com/view/delivery/972WIS_INST/1275016260003596/1375015250003596
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Sato, T., Sase, M., Ishikawa, S., Kajita, M., Asano, J., Sato, T., ... & Ohteki, T. (2020). Characterization of radioresistant epithelial stem cell heterogeneity in the damaged mouse intestine. Scientific reports, 10(1), 1-15.
https://www.nature.com/articles/s41598-020-64987-1
Lange, L., Hoffmann, D., Schwarzer, A., Ha, T. C., Philipp, F., Lenz, D., ... & Schambach, A. (2020). Inducible forward programming of human pluripotent stem cells to hemato-endothelial progenitor cells with hematopoietic progenitor potential. Stem cell reports, 14(1), 122-137.
https://www.sciencedirect.com/science/article/pii/S2213671119304084
Ignatova, V. V., Kaiser, S., Ho, J. S. Y., Bing, X., Stolz, P., Tan, Y. X., ... & Schneider, R. (2020). METTL6 is a tRNA m3C methyltransferase that regulates pluripotency and tumor cell growth. Science advances, 6(35), eaaz4551.
https://advances.sciencemag.org/content/6/35/eaaz4551.abstract
Ohishi, H., Au Yeung, W. K., Unoki, M., Ichiyanagi, K., Fukuda, K., Maenohara, S., ... & Sasaki, H. (2020). Characterization of genetic‐origin‐dependent monoallelic expression in mouse embryonic stem cells. Genes to Cells, 25(1), 54-64.
https://onlinelibrary.wiley.com/doi/abs/10.1111/gtc.12736
Rausch, C., Weber, P., Prorok, P., Hörl, D., Maiser, A., Lehmkuhl, A., ... & Cardoso, M. C. (2020). Developmental differences in genome replication program and origin activation. Nucleic acids research, 48(22), 12751-12777.
https://academic.oup.com/nar/article/48/22/12751/6017362?login=true
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Smits, L. M., Magni, S., Kinugawa, K., Grzyb, K., Luginbühl, J., Sabate-Soler, S., ... & Schwamborn, J. C. (2020). Single-cell transcriptomics reveals multiple neuronal cell types in human midbrain-specific organoids. Cell and tissue research, 382(3), 463-476.
https://link.springer.com/article/10.1007/s00441-020-03249-y
Varga, J., Nicolas, A., Petrocelli, V., Pesic, M., Mahmoud, A., Michels, B. E., ... & Greten, F. R. (2020). AKT-dependent NOTCH3 activation drives tumor progression in a model of mesenchymal colorectal cancer. Journal of Experimental Medicine, 217(10).
https://rupress.org/jem/article-abstract/217/10/e20191515/151998
Di Minin, G., Dumeau, C. E., Grison, A., Chan, W., Monfort, A., Jerome-Majewska, L. A., & Wutz, A. (2020). Tmed2 regulates Smoothened trafficking and Hedgehog signalling. bioRxiv.
https://www.biorxiv.org/content/10.1101/2020.04.20.049957v1.full
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Mulholland, C. B., Nishiyama, A., Ryan, J., Nakamura, R., Yiğit, M., Glück, I. M., ... & Leonhardt, H. (2020). Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals. Nature communications, 11(1), 1-24.
https://www.nature.com/articles/s41467-020-19603-1
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Schenke, M. (2020). DOCTOR OF PHILOSOPHY (PhD) (Doctoral dissertation, University of Veterinary Medicine Hannover).
https://elib.tiho-hannover.de/servlets/MCRFileNodeServlet/tiho_derivate_00000305/SchenkeM-ss20%20.pdf
Renner, H., Grabos, M., Becker, K. J., Kagermeier, T. E., Wu, J., Otto, M., ... & Bruder, J. M. (2020). A fully automated high-throughput workflow for 3D-based chemical screening in human midbrain organoids. Elife, 9, e52904.
Butti, E., Cattaneo, S., Bacigaluppi, M., Cambiaghi, M., Scotti, G., Brambilla, E., ... & Martino, G. (2020). Neural precursor cells contribute to decision-making by tuning striatal connectivity via secretion of IGFBPL-1. bioRxiv.
https://www.biorxiv.org/content/10.1101/2020.12.29.424678v1.full
Rais, Y. (2020). Deterministic reprogramming of somatic cells to pluripotency via regulation of Mbd3/NuRD activity (Doctoral dissertation, The Weizmann Institute of Science).
https://weizmann.esploro.exlibrisgroup.com/view/delivery/972WIS_INST/1275015690003596/1375014170003596
Pieters, T., Sanders, E., Tian, H., van Hengel, J., & Van Roy, F. (2020). Neural defects caused by total and Wnt1-Cre mediated ablation of p120ctn in mice. BMC developmental biology, 20(1), 1-18.
https://link.springer.com/article/10.1186/s12861-020-00222-4
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Rao, V. K., Swarnaseetha, A., Tham, G. H., Lin, W. Q., Han, B. B., Benoukraf, T., ... & Ong, C. T. (2020). Phosphorylation of Tet3 by cdk5 is critical for robust activation of BRN2 during neuronal differentiation. Nucleic acids research, 48(3), 1225-1238.
Warzych, E., Pawlak, P., Lechniak, D., & Madeja, Z. E. (2020). WNT signalling supported by MEK/ERK inhibition is essential to maintain pluripotency in bovine preimplantation embryo. Developmental biology, 463(1), 63-76.
https://www.sciencedirect.com/science/article/pii/S001216062030124X
* many inhibitors used were from Axon Medchem
Moretti, A., Fonteyne, L., Giesert, F., Hoppmann, P., Meier, A. B., Bozoglu, T., ... & Kupatt, C. (2020). Somatic gene editing ameliorates skeletal and cardiac muscle failure in pig and human models of Duchenne muscular dystrophy. Nature medicine, 26(2), 207-214.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7212064/
Liu, Z., Tardat, M., Gill, M. E., Royo, H., Thierry, R., Ozonov, E. A., & Peters, A. H. (2020). SUMO ylated PRC 1 controls histone H3. 3 deposition and genome integrity of embryonic heterochromatin. The EMBO journal, 39(13), e103697.
(3 μM CHIR99021 and 0.8 μM PD184352, Axon Medchem).
Fischer, B. (2020). Comparative analysis of biopolymer-based scaffolds for therapeutically relevant cells.
https://scidok.sulb.uni-saarland.de/handle/20.500.11880/30668
https://scidok.sulb.uni-saarland.de/bitstream/20.500.11880/30668/1/Dissertation_Benjamin_Fischer.pdf
Evans, R. E. (2020). Biomaterial encapsulation to improve cell therapy for Parkinson's disease (Doctoral dissertation, UCL (University College London)).
Kane, K. I., Jarazo, J., Moreno, E. L., Fleming, R. M., & Schwamborn, J. C. (2020). Passive controlled flow for Parkinson's disease neuronal cell culture in 3D microfluidic devices. Organs-on-a-Chip, 2, 100005.
Ito, H., Watari, K., Shibata, T., Miyamoto, T., Murakami, Y., Nakahara, Y., ... & Ono, M. (2020). Bidirectional regulation between NDRG1 and GSK3β controls tumor growth and is targeted by differentiation inducing factor-1 in glioblastoma. Cancer research, 80(2), 234-248.
https://cancerres.aacrjournals.org/content/80/2/234.full
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Genolet, O., Monaco, A. A., Dunkel, I., Boettcher, M., & Schulz, E. G. (2020). Identification of X-chromosomal genes that drive global X-dosage effects in mammals. bioRxiv.
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Cuartas-López, A. M., & Gallego-Gómez, J. C. (2020). Glycogen synthase kinase 3ß participates in late stages of Dengue virus-2 infection. Memórias do Instituto Oswaldo Cruz, 115.
Nishiyama, A., Mulholland, C. B., Bultmann, S., Kori, S., Endo, A., Saeki, Y., ... & Kumamoto, S. (2020). Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nature Communications, 11(1), 1-17.
2i: PD0325901 and CHIR99021 from Axon Medchem
Katsuda, T., Kawamata, M., Inoue, A., Yamaguchi, T., Abe, M., & Ochiya, T. (2020). Long‐term maintenance of functional primary human hepatocytes using small molecules. FEBS letters, 594(1), 114-125.
https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/1873-3468.13582
2i: CHIR99021 and PD0325901 from Axon Medchem
Rao, V. K., Swarnaseetha, A., Tham, G. H., Lin, W. Q., Han, B. B., Benoukraf, T., ... & Ong, C. T. (2020). Phosphorylation of Tet3 by cdk5 is critical for robust activation of BRN2 during neuronal differentiation. Nucleic Acids Research, 48(3), 1225-1238.
https://academic.oup.com/nar/article/48/3/1225/5661090
Mochida, T., Ueno, H., Tsubooka-Yamazoe, N., Hiyoshi, H., Ito, R., Matsumoto, H., & Toyoda, T. (2020). Insulin-Deficient Diabetic Condition Upregulates the Insulin-Secreting Capacity of Human Induced Pluripotent Stem Cell–Derived Pancreatic Endocrine Progenitor Cells After Implantation in Mice. Diabetes, 69(4), 634-646.
https://diabetes.diabetesjournals.org/content/69/4/634.abstract
Bérenger-Currias, N. M., Mircea, M., Adegeest, E., van den Berg, P. R., Feliksik, M., Hochane, M., ... & Semrau, S. (2020). Early neurulation recapitulated in assemblies of embryonic and extraembryonic cells. bioRxiv.
https://www.biorxiv.org/content/10.1101/2020.02.13.947655v1.abstract
Rahimoff, R., & KSR, K. S. R. (2020). 4 Material und Methoden der unveröffentlichten Arbeiten. Untersuchung des Metabolismus nicht-kanonischer DNA-Basen in embryonalen Stammzellen, 121.
https://edoc.ub.uni-muenchen.de/25568/1/Kirchner_Angie_G.pdf#page=137
*3i: PD0325901, CHIR99021, and CGP77675 from Axon Medchem
El-Sehemy, A., Selvadurai, H. J., Ortin-Martinez, A., Pokrajac, N. T., Mamatjan, Y., Tachibana, N., ... & Dirks, P. (2020). Norrin mediates tumor-promoting and-suppressive effects in glioblastoma via Notch and WNT. The Journal of Clinical Investigation. 130(6):3069-3086.
https://www.jci.org/articles/view/128994/pdf
Meek, S., Wei, J., Oh, T., Watson, T., Olavarrieta, J., Sutherland, L., ... & Burdon, T. (2020). A Stem Cell Reporter for Investigating Pluripotency and Self-Renewal in the Rat. Stem Cell Reports. 14 (1), 154-166.
https://www.sciencedirect.com/science/article/pii/S2213671119304151
Tang, L., Wang, H., Dai, B., Wang, X., Zhou, D., Shen, J., ... & Wu, Q. (2020). Human induced pluripotent stem cell-derived cardiomyocytes reveal abnormal TGFβ signaling in type 2 diabetes mellitus. Journal of Molecular and Cellular Cardiology. 142, 53-64.
https://www.sciencedirect.com/science/article/pii/S002228282030081X
Shiozawa, S., Nakajima, M., Okahara, J., Kuortaki, Y., Kisa, F., Yoshimatsu, S., ... & Nikaido, I. (2020). Primed to naïve-like conversion of the common marmoset embryonic stem cells. Stem Cells and Development, 29, 12, https://doi.org/10.1089/scd.2019.0259
https://www.liebertpub.com/doi/abs/10.1089/scd.2019.0259
Haraguchi, S., Dang-Nguyen, T. Q., Wells, D., Fuchimoto, D., Fukuda, T., & Tokunaga, T. (2020). Establishment of porcine nuclear transfer-derived embryonic stem cells using induced pluripotent stem cells as donor nuclei. Journal of Reproduction and Development, 2019-137.
https://www.jstage.jst.go.jp/article/jrd/advpub/0/advpub_2019-137/_article/-char/ja/
Bartoccetti, M., van der Veer, B. K., Luo, X., Khoueiry, R., She, P., Bajaj, M., ... & Koh, K. P. (2020). Regulatory dynamics of Tet1 and Oct4 resolve stages of global DNA demethylation and transcriptomic changes in reprogramming. Cell reports, 30(7), 2150-2169.
https://www.sciencedirect.com/science/article/pii/S2211124720300905
*2i: CHIR99021 and PD0325901 from Axon Medchem
Saraswat, D., Polanco, J. J., Shayya, H. J., Tripathi, A., Welliver, R., Pol, S. U., ... & Dutta, R. (2020). Overcoming the inhibitory microenvironment surrounding oligodendrocyte progenitor cells following demyelination. bioRxiv.
https://www.biorxiv.org/content/10.1101/2020.01.21.906073v2.abstract
Van Den Brink, L., Brandão, K. O., Yiangou, L., Mol, M. P., Grandela, C., Mummery, C. L., ... & Davis, R. P. (2020). Cryopreservation of human pluripotent stem cell-derived cardiomyocytes is not detrimental to their molecular and functional properties. Stem Cell Research, 43, 101698.
https://www.sciencedirect.com/science/article/pii/S1873506119303289
De Cicco, S., Ivanyuk, D., Haq, W., Panagiotakopoulou, V., Arsic, A., Schoendorf, D., ... & Schneiderhan-Marra, N. (2020). Interferon-γ signaling synergizes with LRRK2 in human neurons and microglia. bioRxiv.
https://www.biorxiv.org/content/10.1101/2020.01.30.925222v1.abstract
Le Harzic, R., Meiser, I., Neubauer, J. C., Riemann, I., Schiffer, M., Stracke, F., & Zimmermann, H. (2020). Diffraction-based technology for the monitoring of contraction dynamics in 3D and 2D tissue models. Biomedical Optics Express, 11(2), 517-532.
https://www.osapublishing.org/abstract.cfm?uri=boe-11-2-517
Marques, L. B., Ottoni, F. M., Pinto, M. C. X., Ribeiro, J. M., de Sousa, F. S., Weinlich, R., ... & Alves, R. J. (2020). Lapachol acetylglycosylation enhances its cytotoxic and pro-apoptotic activities in HL60 cells. Toxicology in Vitro, 65, 104772.
https://www.sciencedirect.com/science/article/pii/S0887233319307131
Katsuda, T., Hosaka, K., Matsuzaki, J., Usuba, W., Prieto-Vila, M., Yamaguchi, T., ... & Ochiya, T. (2020). Transcriptomic dissection of hepatocyte heterogeneity: linking ploidy, zonation, and stem/progenitor cell characteristics. Cellular and molecular gastroenterology and hepatology, 9(1), 161-183.
https://www.sciencedirect.com/science/article/pii/S2352345X19301171
2019 (74 citations)
https://www.nature.com/articles/s41556-019-0397-z
*2i: CHIR99021 + PD0325901 from Axon Medchem
Hamilton, W. B., Mosesson, Y., Monteiro, R. S., Emdal, K. B., Knudsen, T. E., Francavilla, C., ... & Brickman, J. M. (2019). Dynamic lineage priming is driven via direct enhancer regulation by ERK. Nature, 575(7782), 355-360.
https://www.nature.com/articles/s41586-019-1732-z
Madeja, Z. E., Warzych, E., Pawlak, P., & Lechniak, D. (2019). Inhibitor mediated WNT and MEK/ERK signalling affects apoptosis and the expression of quality related genes in bovine in vitro obtained blastocysts. Biochemical and biophysical research communications, 510(3), 403-408.
https://www.sciencedirect.com/science/article/abs/pii/S0006291X19301421
*CHIR99021, PD0325901, PD184352 and SU5402 from Axon Medchem
M A Garcia-Campos, S Edelheit, U Toth, M Safra, R Shachar, S Viukov, R Winkler, R tNir, L Lasman, A Brandis, J H.Hanna, W Rossmanith, S Schwartz. Deciphering the “m6A Code” via Antibody-Independent Quantitative Profiling. Cell, 2019, 178 (3), 731-747.
https://www.sciencedirect.com/science/article/pii/S0092867419306762
*2i: CHIR99021 and PD0325901 from Axon medchem.
Giulitti, S., Pellegrini, M., Zorzan, I., Martini, P., Gagliano, O., Mutarelli, M., ... & Martello, G. (2019). Direct generation of human naive induced pluripotent stem cells from somatic cells in microfluidics. Nat. Cell Biol, 21, 1-19.
https://www.nature.com/articles/s41556-018-0254-5.pdf?origin=ppub
*6i: CHIR99021, PD0325901, GO6983, WH-4-023, SB590885, and Y27632 from Axon Medchem
Heurtier, V., Owens, N., Gonzalez, I., Mueller, F., Proux, C., Mornico, D., ... & Navarro, P. (2019). The molecular logic of Nanog-induced self-renewal in mouse embryonic stem cells. Nature communications, 10(1), 1109.
https://www.nature.com/articles/s41467-019-09041-z
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Kamenova, I., Mukherjee, P., Conic, S., Mueller, F., El-Saafin, F., Bardot, P., ... & Vincent, S. D. (2019). Co-translational assembly of mammalian nuclear multisubunit complexes. Nature communications, 10(1), 1-15.
* 2i: PD0325901 and CHIR99021 from Axon Medchem
Rooijers, K., Markodimitraki, C. M., Rang, F. J., de Vries, S. S., Chialastri, A., de Luca, K. L., ... Dey, S. & Kind, J. (2019). Simultaneous quantification of protein–DNA contacts and transcriptomes in single cells. Nature biotechnology, 37(7), 766-772.
*2i: CHIR99021 and PD0325901 from Axon Medchem
Rooijers, K., Markodimitraki, C. M., Rang, F. J., de Vries, S. S., Chialastri, A., de Luca, K. L., ... & Kind, J. (2019). scDam&T‐seq combines DNA adenine methyltransferase-based labeling of protein-DNA contact sites with transcriptome sequencing to analyze regulatory programs in single cells. Nature biotechnology, 37(7), 766.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6609448/
*2i: CHIR99021 and PD0325901 from Axon Medchem
Li, J., Rozwadowska, N., Clark, A., Fil, D., Napierala, J. S., & Napierala, M. (2019). Excision of the expanded GAA repeats corrects cardiomyopathy phenotypes of iPSC-derived Friedreich's ataxia cardiomyocytes. Stem cell research, 40, 101529.
B. Di Stefano, E.C. Luo, C. Haggerty, ..., A. Meissner, Gene W. Yeo, K. Hochedlinger (2019) The RNA Helicase DDX6 Controls Cellular Plasticity by Modulating P-Body Homeostasis. Cell Stem Cell, 25, 1-17.
http://yeolab.github.io/papers/2019/Stefano_Enching_cellstemmcell_2019.pdf
* IM-12, SB590885, WH-4-23, PD0325901, CHIR99021, Y-27632 from Axon Medchem
Toyoda, T., Kimura, A., Tanaka, H., & Osafune, K. (2019). Efficient Generation of Pancreas/Duodenum Homeobox Protein 1+ Posterior Foregut/Pancreatic Progenitors from hPSCs in Adhesion Cultures. JoVE (Journal of Visualized Experiments), (145), e57641.
https://www.jove.com/video/57641/efficient-generation-pancreasduodenum-homeobox-protein-1-posterior
https://escholarship.org/content/qt94k5n9jh/qt94k5n9jh.pdf
Heap, R. E., Segarra-Fas, A., Blain, A. P., Findlay, G. M., & Trost, M. (2019). Profiling embryonic stem cell differentiation by MALDI TOF mass spectrometry: development of a reproducible and robust sample preparation workflow. Analyst, 144(21), 6371-6381.
2i: from Axon Medchem
De Clerck, L., Taelman, J., Popovic, M., Willems, S., Van der Jeught, M., Heindryckx, B., ... & Dhaenens, M. (2019). Untargeted histone profiling during naive conversion uncovers conserved modification markers between mouse and human. Scientific reports, 9(1), 1-11.
https://www.nature.com/articles/s41598-019-53681-6
* CHIR99021 and BIRB796 from Axon Medchem
Monzel, A. S., Hemmer, K., Mukendi, T. K., Lucarelli, P., Rosety, I., Zagare, A., ... & Azuaje, F. (2019). Machine learning-assisted neurotoxicity prediction in human midbrain organoids. bioRxiv, 774240.
https://www.biorxiv.org/content/10.1101/774240v1.abstract
Drowley, L., McPheat, J., Nordqvist, A., Peel, S., Karlsson, U., Martinsson, S., ... & Sánchez, J. (2019). Discovery of retinoic acid receptor agonists as proliferators of cardiac progenitor cells through a phenotypic screening approach. Stem cells translational medicine.
https://stemcellsjournals.onlinelibrary.wiley.com/doi/abs/10.1002/sctm.19-0069
Qiu, Q., Hu, P., Govek, K. W., Camara, P. G., & Wu, H. (2019). Massively parallel, time-resolved single-cell RNA sequencing with scNT-Seq. bioRxiv.
https://www.biorxiv.org/content/10.1101/2019.12.19.882050v1.full
2i: CHIR99021 and PD0325901 from Axon Medchem
Vanheer, L., Song, J., De Geest, N., Janiszewski, A., Talon, I., Provenzano, C., ... & Pasque, V. (2019). Tox4 modulates cell fate reprogramming. Journal of cell science, 132(20), jcs232223.
https://jcs.biologists.org/content/joces/132/20/jcs232223.full.pdf
S Tanigawa, H Naganuma, Y Kaku, T Era, T Sakuma, T Yamamoto, A Taguchi, R Nishinakamura. Activin Is Superior to BMP7 for Efficient Maintenance of Human iPSC-Derived Nephron Progenitors. Stem Cell Reports. 2019, 13 (2), 322-337.
https://www.sciencedirect.com/science/article/pii/S2213671119302553
Yoshida, Y., Soma, T., Matsuzaki, T., & Kishimoto, J. (2019). Wnt activator CHIR99021-stimulated human dermal papilla spheroids contribute to hair follicle formation and production of reconstituted follicle-enriched human skin. Biochemical and biophysical research communications, 516(3), 599-605.
https://www.sciencedirect.com/science/article/pii/S0006291X19311611
Okuyama, H., Ohnishi, H., Nakamura, R., Yamashita, M., Kishimoto, Y., Tateya, I., ... & Omori, K. (2019). Transplantation of multiciliated airway cells derived from human iPS cells using an artificial tracheal patch into rat trachea. Journal of tissue engineering and regenerative medicine, 13(6), 1019-1030.
https://onlinelibrary.wiley.com/doi/abs/10.1002/term.2849
Dierickx, P., Emmett, M. J., Jiang, C., Uehara, K., Liu, M., Adlanmerini, M., & Lazar, M. A. (2019). SR9009 has REV-ERB–independent effects on cell proliferation and metabolism. Proceedings of the National Academy of Sciences, 116(25), 12147-12152.
https://www.pnas.org/content/116/25/12147
* 2i: CHIR99021 and PD0325901 from Axon Medchem
Bluhmki, T., Traub, S., Schruf, E., Garnett, J., Gantner, F., Bischoff, D., & Heilker, R. (2019). Differentiation of hiPS Cells into Definitive Endoderm for High-Throughput Screening. In Cell-Based Assays Using iPSCs for Drug Development and Testing (pp. 101-115). Humana, New York, NY.
https://link.springer.com/protocol/10.1007/978-1-4939-9477-9_9
Minami, T., Ishii, T., Yasuchika, K., Fukumitsu, K., Ogiso, S., Miyauchi, Y., ... & Kawamoto, H. (2019). Novel hybrid three-dimensional artificial liver using human induced pluripotent stem cells and a rat decellularized liver scaffold. Regenerative therapy, 10, 127-133.
https://www.sciencedirect.com/science/article/pii/S235232041830107X
Malaguti, M., Migueles, R. P., Blin, G., Lin, C. Y., & Lowell, S. (2019). Id1 Stabilizes Epiblast Identity by Sensing Delays in Nodal Activation and Adjusting the Timing of Differentiation. Developmental cell. 50(4), 462-477.
https://www.sciencedirect.com/science/article/pii/S1534580719304459
* CHIR99021, LDN193189 and PD0325901 from Axon Medchem
Yang, S., Ding, S., He, S., He, L., Gao, K., Peng, S., & Shuai, C. (2019). Differentiation of primordial germ cells from premature ovarian insufficiency-derived induced pluripotent stem cells. Stem cell research & therapy, 10(1), 156.
https://stemcellres.biomedcentral.com/articles/10.1186/s13287-019-1261-6
Weber, P., Rausch, C., Scholl, A., & Cardoso, M. C. (2019). Repli-FISH (Fluorescence in Situ Hybridization): Application of 3D-(Immuno)-FISH for the Study of DNA Replication Timing of Genetic Repeat Elements.
http://www.cardoso-lab.org/publications/Weber,%20Rausch%202019.pdf
*2i: CHIR99021 and PD0325901 from Axon Medchem
Hirabayashi, M., Takizawa, A., & Hochi, S. (2019). Embryonic Stem Cells and Gene Manipulation in Rat. In Rat Genomics (pp. 115-130). Humana, New York, NY.
https://link.springer.com/protocol/10.1007/978-1-4939-9581-3_5
Nakajima, M., Yoshimatsu, S., Sato, T., Nakamura, M., Okahara, J., Sasaki, E., ... & Okano, H. (2019). Establishment of induced pluripotent stem cells from common marmoset fibroblasts by RNA-based reprogramming. Biochemical and biophysical research communications.
https://www.sciencedirect.com/science/article/pii/S0006291X19310939
Saludas, L., Garbayo, E., Mazo, M., Abizanda, G., Garcia, O. I., Raya, A., ... & Blanco-prieto, M. J. (2019). Long-term engraftment of human cardiomyocytes combined with biodegradable microparticles induces heart repair. Journal of Pharmacology and Experimental Therapeutics, jpet-118.
http://jpet.aspetjournals.org/content/jpet/early/2019/02/06/jpet.118.256065.full.pdf
*CHIR99021 and C-59 from Axon Medchem
Wu, H., Vonk, K. K., van der Maarel, S. M., Santen, G. W., & Daxinger, L. (2019). A functional assay to classify ZBTB24 missense variants of unknown significance. Human mutation.
2i: CHIR99021 and PD0325901 from Axon Medchem
Smits, L. M., Reinhardt, L., Reinhardt, P., Glatza, M., Monzel, A. S., Stanslowsky, N., ... & Nicklas, S. M. (2019). Modeling Parkinson’s disease in midbrain-like organoids. NPJ Parkinson's disease, 5(1), 5.
https://www.nature.com/articles/s41531-019-0078-4
Cosset, E., Locatelli, M., Marteyn, A., Lescuyer, P., Antonia, F. D., Mor, F. M., ... & Tieng, V. (2019). Human Neural Organoids for Studying Brain Cancer and Neurodegenerative Diseases. JoVE (Journal of Visualized Experiments), (148), e59682.
https://www.jove.com/video/59682/human-neural-organoids-for-studying-brain-cancer-neurodegenerative
* CHIR99021 and LDN193189 from Axon Medchem
An, S., Park, U. H., Moon, S., Kang, M., Youn, H., Hwang, J. T., ... & Um, S. J. (2019). Asxl1 ablation in mouse embryonic stem cells impairs neural differentiation without affecting self-renewal. Biochemical and biophysical research communications, 508(3), 907-913.
https://www.sciencedirect.com/science/article/pii/S0006291X18326901
* 3i: SU5402, PD184352 and CHIR99021 from Axon Medchem
Katsuda, T., Matsuzaki, J., Yamaguchi, T., Yamada, Y., Hosaka, K., Takeuchi, A., ... & Ochiya, T. (2019). Generation of human hepatic progenitor cells with regenerative and metabolic capacities from primary hepatocytes. BioRxiv, 601922.
https://www.biorxiv.org/content/10.1101/601922v1.abstract
Cao, X., Yakala, G. K., van den Hil, F. E., Cochrane, A., Mummery, C. L., & Orlova, V. V. (2019). Differentiation and Functional Comparison of Monocytes and Macrophages from hiPSCs with Peripheral Blood Derivatives. Stem cell reports, 12(6), 1282-1297.
https://www.sciencedirect.com/science/article/pii/S2213671119301705
Bursch, F., Kalmbach, N., Naujock, M., Staege, S., Eggenschwiler, R., Abo-Rady, M., ... & Boeckers, T. M. (2019). Altered calcium dynamics and glutamate receptor properties in iPSC derived motor neurons from ALS patients with C9orf72, FUS, SOD1 or TDP43 mutations. Human molecular genetics.
https://academic.oup.com/hmg/advance-article-abstract/doi/10.1093/hmg/ddz107/5492438
Schöneborn, H., Raudzus, F., Secret, E., Otten, N., Michel, A., Fresnais, J., ... & Heumann, R. (2019). Novel Tools towards Magnetic Guidance of Neurite Growth:(I) Guidance of Magnetic Nanoparticles into Neurite Extensions of Induced Human Neurons and In Vitro Functionalization with RAS Regulating Proteins. Journal of functional biomaterials, 10(3), 32.
https://www.mdpi.com/2079-4983/10/3/32
Duval, N., Vaslin, C., Barata, T. C., Frarma, Y., Contremoulins, V., Baudin, X., ... & Ribes, V. C. (2019). BMP4 patterns Smad activity and generates stereotyped cell fate organization in spinal organoids. Development, 146(14), dev175430.
https://dev.biologists.org/content/146/14/dev175430.full
Boonen, T. M. P. M. (2019). Development of a myocardial infarction model by the design of a miniaturized 3D culture platform (Master's thesis, University of Twente).
https://essay.utwente.nl/79975/1/Master%20thesis%20T.M.P.M.%20Boonen.pdf
https://onlinelibrary.wiley.com/doi/abs/10.1002/hlca.201800229
* 2i from Axon Medchem
Aizawa, E., 2019. Characterization of in vitro systems to generate oocytes and substitutes of sperm from pluripotent stem cells (Doctoral dissertation, ETH Zurich).
https://www.research-collection.ethz.ch/bitstream/handle/20.500.11850/391005/1/Dissertation_EishiAizawa.pdf
* 2i from Axon Medchem
Spada, F., Schiffers, S., Kirchner, A., Zhang, Y., Kosmatchev, O., Korytiakova, E., ... & Carell, T. (2019). Oxidative and non-oxidative active turnover of genomic methylcytosine in distinct pluripotent states. BioRxiv, 846584.
https://www.biorxiv.org/content/10.1101/846584v1.full
* Axon Medchem (CHIR, CGP, PD, IWR1)
Smits, L. M., Magni, S., Grzyb, K., Antony, P. M., Krüger, R., Skupin, A., ... & Schwamborn, J. (2019). Single-cell transcriptomics reveals multiple neuronal cell types in human midbrain-specific organoids. bioRxiv, 589598.
https://www.biorxiv.org/content/10.1101/589598v1.abstract
Amit, I., David, L.A. and Meital, G.U.R.Y., Yeda Research and Development Co Ltd, 2019. Methods and kits for analyzing dna binding moieties attached to dna. U.S. Patent Application 16/319,499.
https://patents.google.com/patent/US20190203270A1/en
* 2i: PD0325901 and CHIR99021 from Axon Medchem
Hill, R. J., & Crossan, G. P. (2019). DNA cross-link repair safeguards genomic stability during premeiotic germ cell development. Nature genetics, 51(8), 1283.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6675612/
2i: Pd0325901 and CHIR99021 from Axon
Canizo, J. R., Rivolta, A. E. Y., Echegaray, C. V., Suvá, M., Alberio, V., Aller, J. F., ... & Alberio, R. (2019). A dose-dependent response to MEK inhibition determines hypoblast fate in bovine embryos. BMC developmental biology, 19(1), 13.
https://bmcdevbiol.biomedcentral.com/articles/10.1186/s12861-019-0193-9
* PD0325901, GO6983 from Axon Medchem
Ooi, J., Langley, S. R., Xu, X., Utami, K. H., Sim, B., Huang, Y., ... & Low, D. (2019). Unbiased profiling of isogenic Huntington disease hPSC-derived CNS and peripheral cells reveals strong cell-type specificity of CAG length effects. Cell reports, 26(9), 2494-2508.
https://www.sciencedirect.com/science/article/pii/S2211124719301706
Larsen, S. (2019). PHENOTYPIC CHARACTERIZATION OF CELLULAR MODELS OF VPS35-ASSOCIATED MUTATION IN PARKINSON’S DISEASE (Doctoral dissertation, University of Luxembourg, Belvaux, Luxembourg).
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Hohwieler, M., Illing, A., Hermann, P. C., Mayer, T., Stockmann, M., Perkhofer, L., ... & Kuo, C. C. (2017). Human pluripotent stem cell-derived acinar/ductal organoids generate human pancreas upon orthotopic transplantation and allow disease modelling. Gut, 66(3), 473-486.
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*Chir99021 and SB431542 from Axon Medchem
Yamaguchi, T., Sato, H., Kato-Itoh, M., Goto, T., Hara, H., Sanbo, M., ... & Ota, Y. (2017). Interspecies organogenesis generates autologous functional islets. Nature, 542(7640), 191-196.
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*2i: CHIR99021 and PD0325901 from Axon Medchem
Kawamata, M., Katsuda, T., Yamada, Y., & Ochiya, T. (2017). In vitro reconstitution of breast cancer heterogeneity with multipotent cancer stem cells using small molecules. Biochemical and Biophysical Research Communications, 482(4), 750-757.
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*2i: CHIR99021 and PD0325901 from Axon Medchem
Nigro, A. L., Prosper, F., & Aranguren, X. L. (2017). Generation of a Sprague-Dawley-GFP rat iPS cell line. Stem Cell Research. 2017, 21, 47-50.
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*2i: CHIR99021 and PD0325901 from Axon Medchem
Stryjewska, A., Dries, R., Pieters, T., Verstappen, G., Conidi, A., Coddens, K., ... & van Grunsven, L. A. (2017). Zeb2 Regulates Cell Fate at the Exit from Epiblast State in Mouse Embryonic Stem Cells. Stem Cells, 35(3), 611-625.
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*2i: CHIR99021 and PD0325901 from Axon Medchem
Coppiello, G., Abizanda, G., Aguado, N., Iglesias, E., Iglesias-Garcia, O., Nigro, A. L., ... & Aranguren, X. L. (2017). Generation of a Sprague-Dawley-GFP rat iPS cell line. Stem Cell Research. 21, 40-43.
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*2i: CHIR99021 and PD0325901 from Axon Medchem
Coppiello, G., Abizanda, G., Aguado, N., Iglesias, E., Iglesias-Garcia, O., Nigro, A. L., ... & Aranguren, X. L. (2017). Isolation and characterization of Sprague-Dawley and Wistar Kyoto GFP rat embryonic stem cells. Stem Cell Research. 21, 47-50.
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*2i: CHIR99021 and PD0325901 from Axon Medchem
Yang, S., Ding, S., Xu, Q., Li, X., & Xiong, Q. (2017). Genetic Manipulation by Zinc-Finger Nucleases in Rat-Induced Pluripotent Stem Cells. Cellular Reprogramming (Formerly" Cloning and Stem Cells"). 19(3): 180-188.
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Hosokawa, Y., Toyoda, T., Fukui, K., Baden, M. Y., Funato, M., Kondo, Y., ... & Watanabe, A. (2017). Insulin‐producing cells derived from ‘induced pluripotent stem cells’ of patients with fulminant type 1 diabetes: vulnerability to cytokine insults and increased expression of apoptosis‐related genes. Journal of Diabetes Investigation. DOI: 10.1111/jdi.12727
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*2i: CHIR99021 and PD0325901 from Axon Medchem
Ludwig, A. K., Zhang, P., Hastert, F. D., Meyer, S., Rausch, C., Herce, H. D., ... & Storm, C. (2017). Binding of MBD proteins to DNA blocks Tet1 function thereby modulating transcriptional noise. Nucleic acids research, 45(5), 2438-2457.
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*2i: CHIR99021 and PD0325901 from Axon Medchem*
Pieters, T., Haenebalcke, L., Bruneel, K., Vandamme, N., Hochepied, T., van Hengel, J., ... & Goossens, S. (2017). Structure-function Studies in Mouse Embryonic Stem Cells Using Recombinase-mediated Cassette Exchange. JoVE (Journal of Visualized Experiments), (122), e55575-e55575.
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*2i: CHIR99021 and PD0325901 from Axon Medchem
Zhang, P., Rausch, C., Hastert, F. D., Boneva, B., Filatova, A., Patil, S. J., ... & Cardoso, M. C. (2017). Methyl-CpG binding domain protein 1 regulates localization and activity of Tet1 in a CXXC3 domain-dependent manner. Nucleic Acids Research.
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*2i: CHIR99021 and PD0325901 from Axon Medchem
Ziegenhain, C., Vieth, B., Parekh, S., Reinius, B., Guillaumet-Adkins, A., Smets, M., ... & Enard, W. (2017). Comparative analysis of single-cell RNA sequencing methods. Molecular cell, 65(4), 631-643.
http://www.sciencedirect.com/science/article/pii/S1097276517300497
*2i: CHIR99021 and PD0325901 from Axon Medchem
Monzel, A. S., Smits, L. M., Hemmer, K., Hachi, S., Moreno, E. L., van Wuellen, T., ... & Berger, E. (2017). Derivation of human midbrain-specific organoids from neuroepithelial Stem Cells. Stem cell reports, 8(5), 1144-1154.
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*2i: CHIR99021 and PD0325901 from Axon Medchem
Cirelli, E., De Domenico, E., Botti, F., Massoud, R., Geremia, R., & Grimaldi, P. (2017). Effect Of Microgravity On Aromatase Expression In Sertoli Cells. Scientific Reports, 2017; 7: 3469.
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*2i: CHIR99021 and PD0325901 from Axon Medchem
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*2i: CHIR99021 and PD0325901 from Axon Medchem
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*2i: CHIR99021 and PD0325901 from Axon Medchem
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(2i:CHIR99021 and PD0325901 from Axon Medchem)
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*2i: CHIR99021 and PD0325901 from Axon Medchem
piggyBac Transposon-Based Insertional Mutagenesis in Mouse Haploid Embryonic Stem Cells.